Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 165 9e-36 seq62 161 1e-34 seq54 122 1e-22 seq51 107 2e-18 seq1 100 3e-16 seq35 86.0 7e-12 >seq2 Length=1429897 Score = 165 bits (182), Expect = 9e-36 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || ||||| ||||| ||||| Sbjct 256778 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTGGAGTCTTCG 256837 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || |||||||| |||||||| ||||| || |||||| Sbjct 256838 GACACCATCGACAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATTCCCCCGGACCAG 256897 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| ||||||||||| ||||||| || || || | ||||| || Sbjct 256898 CAGCGGTTGATCTTTGCGGGTAAGCAACTGGAGGATGGCCGCACGCTGTCCGACTACAAC 256957 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || |||||||| Sbjct 256958 ATTCAGAAGGAGTCGACCCTTCATCT 256983 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| ||||| Sbjct 256497 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 256556 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | || || || || |||||||||||||| || || || |||||| Sbjct 256557 GATACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 256616 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| |||||||| | ||| || || | ||||| || Sbjct 256617 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGACTACAAC 256676 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || || || || Sbjct 256677 ATTCAGAAGGAGTCAACCCTCCACCT 256702 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| || || || |||||||| || || ||||| ||||| Sbjct 257057 AATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACGCTGGAGGTCGAGTCGTC 257116 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || ||||||| || || |||||||||||||| || || || || || Sbjct 257117 TGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCA 257176 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| |||||||||| || || || | || ||||| Sbjct 257177 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGATTATAA 257236 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || || ||| | || || || ||||| Sbjct 257237 CATCCAGAAGGAGAGCACCCTCCACCTTGTCCTCCGCCTGCGTGGTGG 257284 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| |||||||||||||| || || || ||||| ||||| Sbjct 256145 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 256204 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||||| ||| | ||| | || || |||||||||||||| Sbjct 256205 GATACCATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGG 256248 >seq62 Length=3011317 Score = 161 bits (178), Expect = 1e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||||||| | || ||||||||||| || || ||||| ||||| Sbjct 735532 AATGCAGATCTTCGTCAAGACGTTGACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTC 735473 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || | ||||| || ||||| ||||||||||| ||||| || ||||| Sbjct 735472 GGATACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCA 735413 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || || ||||||||||| ||||||| ||| ||| | | ||||| || Sbjct 735412 GCAACGTCTTATCTTCGCCGGTAAGCAACTGGAGGATGGTCGCACCTTGTCGGACTACAA 735353 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || ||||| || Sbjct 735352 CATTCAGAAGGAGTCAACGCTTCACCT 735326 Score = 104 bits (114), Expect = 3e-17 Identities = 181/279 (65%), Gaps = 52/279 (19%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||||||||| |||||||| || || || ||||| ||||| | Sbjct 735247 ATGCAAATCTTCGTAAAGACGCTTACTGGCAAGACAATCACGCTGGAGGTCGAGTCCTCT 735188 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG----------------- 27508 || | |||| ||| ||||||| || ||||| || ||||||| Sbjct 735187 GACACGATTGACAATGTGAAGGCCAAGATTCAAGATAAGGAGGGGTGAGTGGTACTTCCA 735128 Query 27509 -----------------------------------GAATTCCTCCAGACCAGCAGCGTCT 27533 |||| ||||| || || |||||| | Sbjct 735127 CCAGACCGCATTACTCGTGACTCATAGCTCGCGCAGAATCCCTCCCGATCAACAGCGTTT 735068 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 ||||| || || ||||| ||||| |||| |||||||| | |||||||| ||||||| Sbjct 735067 GATTTTCGCCGGGAAGCAGCTCGAAGATGGACGTACCCTTTCGGACTATAACATCCAAAA 735008 Query 27594 GGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||| ||||| || || |||||||| ||||| || Sbjct 735007 GGAGTCCACGCTTCACCTGGTGTTGCGTCTGCGCGGAGG 734969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/285 (67%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 || |||||| |||||||||| ||| |||| ||||||| || ||| ||||||| ||| Sbjct 2162296 GGCCACCATCATCAACCTTGCCCAGGACTTCGTCGGTGGCAACAACATGAACTTGCTCTT 2162237 Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGAT---GCTGCGAGCTCCCG 32237 ||| || ||||| || || || | || |||||||| || ||| |||| | Sbjct 2162236 GCCGAACGGTCAGTTCGGTACTCGTGACCAGGGCGGCAAGGACCACGCCGCG-GCTC--G 2162180 Query 32238 TTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGC 32297 |||||||||||| | || || | ||||| | | |||| ||||||| || Sbjct 2162179 TTACATCTTCACGGAATTGGCCCCGGTCATCCGCAACGTCATGCACCCCGCGGACGACGC 2162120 Query 32298 GGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGT 32357 | || | ||| | ||||||||| || ||||||||| | || |||| || | Sbjct 2162119 CATCCTGACATACCAGCAGGATGACGGTAGGCAGGTCGAGCCTGAGTGGTACATGCCTAT 2162060 Query 32358 GCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | || ||| | ||||| ||||| || ||||| || || || || Sbjct 2162059 CATCCCAATGGTTTTGGTCAACGGCGCGGAAGGTATTGGCACAGG 2162015 >seq54 Length=666141 Score = 122 bits (134), Expect = 1e-22 Identities = 220/325 (68%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 24584 CGAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTA 24643 |||||| || ||||| || || ||||| ||||||||| | ||||| || | ||||| Sbjct 257878 CGAGGTGTACAACCTCGGCGCGCAGTCGCACGTCAAGGTCTCGTTCGAGATGGCGGAGTA 257937 Query 24644 CACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNN 24703 ||| | | |||| || | || |||||||| | | || || || || ||| Sbjct 257938 CACAGGCGACGTCGACGGCCTCGGCACCCTGCGCCTGCTCGACGCGATCCGCACGTGCGG 257997 Query 24704 NNNNNNNTTGAAATTCA---GATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGT 24760 ||| || | || || |||||| ||| ||| ||| |||||||| Sbjct 257998 GTTCGA---GAAGGTCGTGCGCTTCTACCAGGCGTCGACGTCCGAGCTGTACGGCAAGGT 258054 Query 24761 GCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTC 24820 |||||||||||||||||||| || || || || ||||| ||||| || || | Sbjct 258055 CGTCGAGACGCCACAGTCGGAGACGACGCCGTTCTACCCGCGCTCGCCGTACGGCGTGGC 258114 Query 24821 AAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATG 24880 ||| ||| || |||||||| || |||||||| ||||| | || || ||||| || Sbjct 258115 GAAGATGTACGGCTACTGGATCACGGTCAACTACCGCGAGGCGTACGGCATGTATGCGTG 258174 Query 24881 CAACGGAATTCTGTTCAACCATGAG 24905 |||||| || |||||||||| ||| Sbjct 258175 CAACGGCATCTTGTTCAACCACGAG 258199 >seq51 Length=3165537 Score = 107 bits (118), Expect = 2e-18 Identities = 130/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||||| || |||||| || || || || ||||| || || || ||| || | Sbjct 1579685 AGCGTCTCGTCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCGTTCGCCTCCA 1579626 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| ||||| ||||| ||||| | || || |||||||| |||| Sbjct 1579625 TCTTCTGGCTGAAGAAGCGTGGCCTCATGCC-GGTCTCACCTTCTCCAACGAGCTCATCT 1579567 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG 64890 |||| |||||||| | ||| || |||||| || ||||||||||| ||| Sbjct 1579566 CTCGTGACGAGGGTATGCACACGGACTTTGCGTGCTTGCTCTTCAGCCACCTGAAG 1579511 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 64663 aaaaaGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGGG-TCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||| |||| ||||| | || | | || ||| | | |||| Sbjct 1581713 AAGAAGGCAGACTGGGCACTCCGCTGGATATCTGACGAGCGCTCAGTGTTCGCTGAGCGG 1581772 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || || ||| || || || || ||||| ||||| |||||| || || ||| Sbjct 1581773 CTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGTTCATTCGCCTCCATCTTC 1581832 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||| | || ||||| || || ||||| || || | |||||||||||||| ||| || Sbjct 1581833 TGGATCAAGAAGCGCGGGCTAATGCCCGGCCTCACATTTTCGAACGAGCTCATCAGCCGC 1581892 Query 64840 GACGAGGGGCTCCAC 64854 ||||||||| | ||| Sbjct 1581893 GACGAGGGGATGCAC 1581907 >seq1 Length=3841264 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 || || || || |||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 3252819 CGAGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATG 3252878 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 |||||| | | || || | || | |||||| |||||||| ||||| ||| Sbjct 3252879 CTCGTGAGCTGACCCATGGTCGGCGATTGCAGGTGGATGTTGAGAGACTGCGACTGGCAG 3252938 Query 80155 ATGAAAGCCCCACGATCTGCCGC 80177 ||||| || ||||| || || || Sbjct 3252939 ATGAACGCGCCACGGTCCGCAGC 3252961 >seq35 Length=1232546 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || |||||||| ||||| Sbjct 1141150 AATGCAGATCTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTC 1141209 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||||| || ||||||||||||||||| Sbjct 1141210 GGACACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGG 1141254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309416214560