Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 seq62 91.5 9e-14 >seq2 Length=1429897 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| |||||||| || || ||||| || || |||| || || || Sbjct 256699 TGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGC 256640 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | ||||| ||||| ||||| | ||||||||||| |||| || Sbjct 256639 TTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATC-TT 256581 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||| ||| | ||| || || | ||| || || | ||| ||||| || || || Sbjct 256580 GGCTTTGACGTTGTCAATGGTATCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCAGT 256521 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || || ||||| ||||||||| Sbjct 256520 CAGAGTCTTGACAAAGATCTGCATG 256496 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||||||||| || || || || | || || || || Sbjct 257260 TGGAGGGTGCTCTCCTTCTGGATGTTATAATCCGAGAGCGTGCGGCCATCCTCGAGCTGC 257201 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | |||||| || ||||| || | ||||||||||| |||| || Sbjct 257200 TTGCCCGCGAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATC-TT 257142 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| || || ||||| ||| || |||| || || || || || || Sbjct 257141 CGCCTTCACGTTATCGATCGTGTCAGACGACTCGACCTCCAGCGTGATAGTCTTCCCCGT 257082 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||||||||| Sbjct 257081 GAGGGTCTTGACGAAAATCTGCAT 257058 >seq62 Length=3011317 Score = 91.5 bits (100), Expect = 9e-14 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||||| || || ||| ||||||||| |||||||| || ||||| || || Sbjct 734978 AGACGCAACACCAGGTGAAGCGTGGACTCCTTTTGGATGTTATAGTCCGAAAGGGTACGT 735037 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| || || || ||||| || || ||||||||||| || || || Sbjct 735038 CCATCTTCGAGCTGCTTCCCGGCGAAAATCAAACGCTGTTGATCGGGAGG 735087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729070664154