Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 122 8e-23 seq62 107 2e-18 >seq2 Length=1429897 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||||||||||||| | || ||||| || ||||| | || Sbjct 256777 CATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTGGAGTCTTC 256836 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| ||| ||||| || || || || || || || || || Sbjct 256837 GGACACCATCGACAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATTCCCCCGGACCA 256896 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | || || || ||| |||| || | || | ||||| ||||| Sbjct 256897 GCAGCGGTTGATCTTTGCGGGTAAGCAACTGGAGGATGGCCGCACGCTGTCCGACTACAA 256956 Query 27167 CATTCAAAAGGAGTCGACCTTACAT 27191 |||||| |||||||||||| | ||| Sbjct 256957 CATTCAGAAGGAGTCGACCCTTCAT 256981 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || |||||||| |||||| | || || || || || || | || Sbjct 256496 CATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACCCTCGAGGTCGAGTCCTC 256555 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | |||||| || || || ||||| || ||||| || || || || Sbjct 256556 GGATACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 256615 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || ||| || || ||||||| ||||| Sbjct 256616 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGACTACAA 256675 Query 27167 CATTCAAAAGGAGTCGACC 27185 |||||| |||||||| ||| Sbjct 256676 CATTCAGAAGGAGTCAACC 256694 >seq62 Length=3011317 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| |||| || || || || || |||| Sbjct 735531 ATGCAGATCTTCGTCAAGACGTTGACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTCG 735472 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || ||||||||||| || ||||| || || || || Sbjct 735471 GATACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAG 735412 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || ||| |||| || || ||| | || || |||||| Sbjct 735411 CAACGTCTTATCTTCGCCGGTAAGCAACTGGAGGATGGTCGCACCTTGTCGGACTACAAC 735352 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| |||||||| || Sbjct 735351 ATTCAGAAGGAGTCAAC 735335 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || || ||||||||||||||||| || | |||||| || || | ||||| | ||| Sbjct 735090 ATCCCTCCCGATCAACAGCGTTTGATTTTCGCCGGGAAGCAGCTCGAAGATGGACGTACC 735031 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 |||| || || ||||| ||||||||||| || | || |||| |||||| |||| || Sbjct 735030 CTTTCGGACTATAACATCCAAAAGGAGTCCACGCTTCACCTGGTGTTGCGTCTGCGCGGA 734971 Query 27213 GGCAT 27217 || || Sbjct 734970 GGGAT 734966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917649765760