Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq62 98.7 7e-16 seq2 95.1 8e-15 >seq62 Length=3011317 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || |||||||| || |||||||| | || || || || || Sbjct 734967 ATGCAGATATTCGTGAAGACGCTCACGGGCAAGACGATCACGTTGGAGGTCGAATCTTCG 734908 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || || || ||| | |||||||| ||| Sbjct 734907 GACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCGCCAGACCAA 734848 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || ||||| |||| ||||| | ||||||||| Sbjct 734847 CAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGCACGCTCTCGGATTACAAC 734788 Query 23791 ATACAAAAAGAG 23802 || || |||||| Sbjct 734787 ATCCAGAAAGAG 734776 >seq2 Length=1429897 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || |||||||||||||| || || || || Sbjct 256778 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTGGAGTCTTCG 256837 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| || || || ||| | || || || || Sbjct 256838 GACACCATCGACAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATTCCCCCGGACCAG 256897 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| || || |||||||| || | ||||| | ||| |||||| Sbjct 256898 CAGCGGTTGATCTTTGCGGGTAAGCAACTGGAGGATGGCCGCACGCTGTCCGACTACAAC 256957 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 256958 ATTCAGAAGGAGTCGAC 256974 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||||||||| || || ||||| || || || || || | Sbjct 257057 AATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACGCTGGAGGTCGAGTCGTC 257116 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| || ||| | || || ||||| Sbjct 257117 TGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCA 257176 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || || || || | ||||| | ||||| || Sbjct 257177 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGATTATAA 257236 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 257237 CATCCAGAAGGAG 257249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009031510104