Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq51 114 2e-20 >seq51 Length=3165537 Score = 114 bits (126), Expect = 2e-20 Identities = 355/544 (65%), Gaps = 23/544 (4%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||||| ||| || ||||| || || ||||| || || | ||| Sbjct 1579575 TCGTTGGAGAAGGTGAGACCGG-CATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCG 1579633 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC---- 48298 || || || || ||||| || || || ||||| ||||| ||| || | ||| | Sbjct 1579634 AACGAGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGACGAGACGCTCCGCAAAG 1579693 Query 48299 GTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 | ||| ||| || | ||||| || | ||||| || ||||||||||| | ||||| Sbjct 1579694 GCAACCTCCTT-GTCGCTGATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 1579752 Query 48359 CATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCT----ATCTTTAACGTAAG 48414 || || || || |||| ||| || | || | |||| || || | ||| | Sbjct 1579753 GATCGTGTCAATGGCATCGAAG----AGGTATTCGCGCTGCTGAGGGTCCTTGATGTAGG 1579808 Query 48415 TATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGT 48474 | || || | || || | ||||||||||| || || || || || || |||| Sbjct 1579809 TGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATTTGGAAACCGT 1579868 Query 48475 AAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCAT 48534 | || || | || || | | ||| ||||| | | || || || | | ||||| | Sbjct 1579869 AGAAGCAGCGTGCCTCCGCGGCCTGGACCTCGTTGGAGAAACGCTCGACGAGGTTCTCGT 1579928 Query 48535 TTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAA------ATATT 48588 | || || ||||| ||||| || || || | || || || || | | Sbjct 1579929 TGACGATACCATCGGACGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCAT 1579988 Query 48589 TTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAG 48648 |||||| || | | || |||||||| | || || || || | ||| | || || | Sbjct 1579989 CGTCGTTG--AGGC-GGTTGTTCCAGTCGTGGAGGTCCTTGGACAGATCCATCTCCTCCG 1580045 Query 48649 CTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTG 48708 | ||||| || || ||||| || ||||| ||||| | ||| || || ||||||||| | Sbjct 1580046 CCGTCCAGAAGGAGGCCTCAGCCTTTTTGTACATCTGCCAGATTTCGTGGTATTGGATGG 1580105 Query 48709 GGAA 48712 |||| Sbjct 1580106 GGAA 1580109 Score = 111 bits (122), Expect = 2e-19 Identities = 208/302 (69%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| ||||||||||| ||||||||||| || || || |||| ||| || || | ||| Sbjct 1581879 TCGTTCGAAAATGTGAGGCCGGGCATTAGCCCGCGCTTCTTGATCCAGAAGATGGAGGCG 1581820 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301 || || ||||| ||||| || || || ||||| || || || || | ||| || | Sbjct 1581819 AATGAACCAGAGAAGAAGATACCCTCGACGGCGGCGAAGGCAACGAGCCGCTCAGCGAAC 1581760 Query 48302 ACTG-GC-TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 |||| || |||| |||||| || ||||||| || ||||||||||| | || || Sbjct 1581759 ACTGAGCGCTCGTCAGATATCCAGCGGAGTGCCCAGTCTGCCTTCTTCTTGATGCATGGG 1581700 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || || || | ||||| ||| | || | ||| || | ||| || || Sbjct 1581699 ATGGTCTCGATGGCGTCGAAGAGGAAGGTACGCTCGGCGGGATCCTTGATGTAGGTGTCA 1581640 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | || ||| | || ||||| | ||||| || |||||||| ||||| || Sbjct 1581639 ATGAGGAGGGAATAGGTCTCAGAGTGCACGTTTTCGATCATTATCTGAAAGCCGTAGAAG 1581580 Query 48480 CA 48481 || Sbjct 1581579 CA 1581578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667601696320