Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 154 4e-32 seq62 127 5e-24 seq35 87.8 4e-12 >seq2 Length=1429897 Score = 154 bits (170), Expect = 4e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || ||||||||||||||||| || ||| || Sbjct 256500 CAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACCCTCGAGGTCGAGTCCTCGGAT 256559 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 256560 ACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 256619 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | |||||| |||| || ||| | Sbjct 256620 CGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGACTACAACATT 256679 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 256680 CAGAAGGAGTCAACCCTCCACCTTG 256704 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || |||||||| ||||||||||| || ||| Sbjct 256781 CAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTGGAGTCTTCGGAC 256840 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||| || || || || || ||||||||||| Sbjct 256841 ACCATCGACAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATTCCCCCGGACCAGCAG 256900 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || || ||||| | || || |||| || ||| | Sbjct 256901 CGGTTGATCTTTGCGGGTAAGCAACTGGAGGATGGCCGCACGCTGTCCGACTACAACATT 256960 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || ||||| Sbjct 256961 CAGAAGGAGTCGACCCTTCATCT 256983 >seq62 Length=3011317 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||||||||||| || || || Sbjct 735528 CAGATCTTCGTCAAGACGTTGACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTCGGAT 735469 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| ||||| || || || || || ||||||||| Sbjct 735468 ACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAGCAA 735409 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||||||||| || || || || ||||| | || |||| | || || ||| | Sbjct 735408 CGTCTTATCTTCGCCGGTAAGCAACTGGAGGATGGTCGCAC-CTTGTCGGACTACAACAT 735350 Query 178103 CCAAAAAGAATCAACACTGCATCT 178126 || || || ||||| || || || Sbjct 735349 TCAGAAGGAGTCAACGCTTCACCT 735326 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || |||||||| | ||||| ||| || ||| Sbjct 734964 CAGATATTCGTGAAGACGCTCACGGGCAAGACGATCACGTTGGAGGTCGAATCTTCGGAC 734905 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || || || || || || ||||| || Sbjct 734904 ACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCGCCAGACCAACAG 734845 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || | ||||| ||| || Sbjct 734844 CGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGCACGCTCTCGGATTACAACATC 734785 Query 178104 CAAAAAGA 178111 || ||||| Sbjct 734784 CAGAAAGA 734777 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||| | || ||||| || ||||| |||||||| || ||||| ||| Sbjct 735809 CAGATTTTCGTGAAAACTTTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGCTCCGAC 735750 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| ||||| |||||||| || || Sbjct 735749 ACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGG 735709 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 |||||||||| || || || || | || |||||||| || ||||||||||||||| | | Sbjct 735092 GAATCCCTCCCGATCAACAGCGTTTGATTTTCGCCGGGAAGCAGCTCGAAGATGGACGTA 735033 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 | ||| | || |||||| ||||||| || || || || || || || ||| Sbjct 735032 CCCTTTCGGACTATAACATCCAAAAGGAGTCCACGCTTCACCTGGTGTTG 734983 >seq35 Length=1232546 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| ||| ||| Sbjct 1141154 CAGATCTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCGGAC 1141213 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| ||||||||||||||| || || Sbjct 1141214 ACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGG 1141254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729071652772