Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq62 419 2e-112 seq11 152 5e-32 seq2 127 2e-24 seq1 113 5e-20 >seq62 Length=98030 Score = 419 bits (464), Expect = 2e-112 Identities = 574/792 (72%), Gaps = 15/792 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| Sbjct 37700 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 37641 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||||| | | ||||||||||||||||| |||||| Sbjct 37640 TCCAAGGACCTCCACGACTGGGACAACAAGCTCAACGACAACGAGCGCCACTTCATCTCC 37581 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| |||||||| ||||||||||||||||||||| || |||||||| Sbjct 37580 CACGTTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAACGAGAACCTCGTCGAGCGA 37521 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| ||| || |||| |||||||| || |||||||||||||| |||||| || Sbjct 37520 TTCAGCTC-GGAAGTTCAGGCCGCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGAT 37462 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | |||||||||| || ||| |||||||||||| ||| | ||| | || Sbjct 37461 GGAGAACATCCACTCGGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAACCAGA 37402 Query 116932 GGAG---AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | || | ||| | || ||||| ||||||| || || |||||| ||||||| Sbjct 37401 GCAGCGCGAATTCC---TCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGGC 37345 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGG 117047 ||| ||||| || || |||||| || || || | ||| |||| | ||||| || | | Sbjct 37344 CGACTGGGCTCTTCGATGGATCAGCGACA-AGCGCGCCACCTTTGCAGAGCGTCTCATCG 37286 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || |||||||||||| ||||||| || || |||||| |||| || ||||||| Sbjct 37285 CCTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGTTCCTTCGCCTCCATCTTCTGGCTCA 37226 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||| || || ||| ||||||||||||||| | ||||||| Sbjct 37225 AGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGG 37166 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCG-ACCGAGCGCG 117226 |||| || |||||||||||| | || |||| || | | |||| | | | || Sbjct 37165 GTCTTCACACCGACTTTGCCTGCCTCCTCTTCAGCCACCTCAAGAAGCGCGCACACCCCG 37106 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | || || ||||| ||| ||| || |||| |||||| || ||||||||| || Sbjct 37105 ACACG-GTGCTCAAGATCATCAGCGAGGCCGTCGAGATCGAGAAGGCCTTCCTCACAGAC 37047 Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 || |||| || | || | || | || || ||| ||||||||||||| | Sbjct 37046 GCATTGCCTGTCAGCTTGATCGGCATGAACGCCGCGCTCATGCGTCAATACATCGAGTAC 36987 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 || || ||| | || || || ||| | | | | |||||| | | | ||||| Sbjct 36986 GTTGCAGACCGCCTTTTGGTCTCGCTCGGCAACCCTGTTCACTACGGCGCAACAAACCCC 36927 Query 117407 CTGGACTTTATG 117418 | ||||||||| Sbjct 36926 TTCGACTTTATG 36915 >seq11 Length=377427 Score = 152 bits (168), Expect = 5e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| || ||| || || Sbjct 144713 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAAGTTGAATCCTCC 144772 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 144773 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCA 144831 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||||||||| | ||| || || || || || |||| |||||| | |||||||| Sbjct 144832 GCAACGACTCATTTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCTTGTCGGACTACAA 144891 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||| ||| |||| || ||||| ||| Sbjct 144892 CATTCAGAAAGAGTCCACTCTCCATCTGGTG 144922 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || ||||||||||||||||||||| |||| || || || Sbjct 224703 AAGATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGTCC 224644 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| |||||| || || | ||||| || ||||| ||| | || Sbjct 224643 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGA 224585 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| ||| || || ||||| || |||| |||||||| ||||| Sbjct 224584 TCAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 224525 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || || || || ||| | ||| || | || || Sbjct 224524 CAACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTTCGCCTGCGTGGTGG 224474 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| |||| ||||| || || Sbjct 144485 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 144544 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| || ||||| ||| | || || Sbjct 144545 GACACTATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCTGATCA 144603 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || ||||| || |||| |||||| | |||||||| Sbjct 144604 GCAGCGTCTCATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGCACCTTGTCGGACTACAA 144663 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 144664 CATCCAGAAGGAGTCGACTCTTCATCTCGT 144693 >seq2 Length=781092 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || |||||| |||| || || | || Sbjct 629252 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCC 629311 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||||||||| | ||||| Sbjct 629312 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 629370 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| || || ||||| || |||| || || ||| |||||||| Sbjct 629371 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACGCTCTCGGACTACAA 629430 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 629431 CATCCAGAAGGAGTCGACCCTCCA 629454 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || ||||| | | Sbjct 629936 ATGCAGATTTTCGTCAAGACACTCACCGGCAAGACGATCACGTTGGAAGTCGAGTCTTCA 629995 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 629996 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 630055 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || || || ||||| || || | || || || |||||||||| Sbjct 630056 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACACTGTCCGACTACAAC 630115 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| ||| ||||| || || | || || | ||||| Sbjct 630116 ATCCAGAAGGAGAGCACTCTGCACCTCGTCCTCCGTCTGCGTGGCGG 630162 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||| ||| |||| || || | | Sbjct 629480 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCG 629539 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | || || | ||||| || ||||| ||| | || || Sbjct 629540 GACACCATTGACAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 629598 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| |||||||| ||||||||| Sbjct 629599 GCAGCGCCTAATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCCGACTACAA 629658 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || ||||| |||| || || || || ||||| Sbjct 629659 CATTCAAAAGGAATCCACACTCCACCTTGTCTTGCG 629694 >seq1 Length=1046041 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||||||| | || || || | |||||| | | | | |||||| Sbjct 845631 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGGCC 845690 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| |||||| | |||||||| || || |||| ||| || || Sbjct 845691 AAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 845750 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| |||||||| ||||||||||||||||||||| | || || || Sbjct 845751 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 845810 Query 40894 CTAGT 40898 || || Sbjct 845811 CTTGT 845815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515156130729680