Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq11 122 1e-22 seq1 84.2 3e-11 >seq2 Length=781092 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||||| | || | ||||||||||||||||| |||||||| | Sbjct 629934 CCTCCGCGCAATCGCAACACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGCTC 629875 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||||||||| || ||||||||||||||||||| || Sbjct 629874 AGGGTGCGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGG 629815 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| |||||| |||| ||| | | | |||||| || || || Sbjct 629814 ATACCTTCCTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGAC 629756 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || |||||||| || || || ||||| Sbjct 629755 TTCCAAGGTGATGGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 629708 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||||||||||| || || ||||| || | ||| || || | || || |||||| Sbjct 630138 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCCTCGAGCTGC 630079 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 |||||||| || ||||||||||||||||||| || | | |||||||||| ||| || Sbjct 630078 TTACCAGCAAAGATGAGTCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTG 630019 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 |||| | | | |||||| || || || || | |||||| || ||||| || Sbjct 630018 GCCTTGACATTGTCGATCGTGTCTGAAGACTCGACTTCCAACGTGATCGTCTTGCCGGTG 629959 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||| Sbjct 629958 AGTGTCTTGACGAAAATCTGCAT 629936 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 629443 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 629384 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 629383 AATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 629325 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| |||| ||||| || ||||| || || ||||| | Sbjct 629324 TGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGAGTCTTGA 629265 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 629264 CGAAGATCTGCAT 629252 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| || | || | |||| ||||||||||| ||||| || | || || || | Sbjct 629695 ACGCAAGACAAGGTGGAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGGCC 629636 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || |||||||| || | || | || ||||| Sbjct 629635 GTCTTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGATCAGGGGGAATGCCTTCCTT 629576 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || ||||| ||| | | | ||||| ||| || || |||| || | Sbjct 629575 GTCCTGGATCTTGGCTTTGA-CGTTGTCAATGGTGTCCGACGACTCAACCTCGAGGGTAA 629517 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | ||||| |||||||| ||||| Sbjct 629516 TGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 629480 >seq11 Length=377427 Score = 122 bits (134), Expect = 1e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 224509 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 224568 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| || | || | || ||||||||| ||| || |||| ||| Sbjct 224569 GATGAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 224627 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| |||| ||||||||||||||||| || ||||| | Sbjct 224628 TGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGA 224687 Query 43171 CAAAGATTTGCATTTT 43186 ||||||| ||||| || Sbjct 224688 CAAAGATCTGCATCTT 224703 >seq1 Length=1046041 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 845798 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 845739 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| || | | |||||||||| ||| | || | |||| Sbjct 845738 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 845680 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 | | | |||||| || ||||| || | |||||||| || || ||| Sbjct 845679 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGTT 845630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571747602378040