Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 140 2e-28 seq11 120 2e-22 seq1 82.4 5e-11 >seq2 Length=781092 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || || ||||| | ||| || || ||||| ||||||||||||||| Sbjct 630162 CCGCCACGCAGACGGAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 630103 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || || || ||||| |||||||||||| || Sbjct 630102 AGTGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGTGGG 630043 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | |||| || | || ||||| Sbjct 630042 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAAGACTCGACT 629983 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||||||||| || || || || |||||||| Sbjct 629982 TCCAACGTGATCGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 629936 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || ||| || |||| || | |||||| || |||||| Sbjct 629442 TCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 629383 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | || ||||||||| ||||| ||| | | | Sbjct 629382 ATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 629323 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || || | ||||| || |||||||| ||||| || || Sbjct 629322 TCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACG 629263 Query 34379 AAGATCTGCATCGC 34392 ||||||||||| || Sbjct 629262 AAGATCTGCATGGC 629249 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || |||||||||||||| || ||| |||| || | ||||||||| ||||| Sbjct 629671 TTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 629612 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || || |||||||| || ||| | || |||||||| ||| || ||||| | | Sbjct 629611 GATTAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATC-TTGGCTTTGACGT 629553 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | || | ||| || || || | || ||||| |||||||| | || || | Sbjct 629552 TGTCAATGGTGTCCGACGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGA 629493 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 629492 CAAAGATCTGCAT 629480 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| | || ||| ||||| | || || || || || |||||||| ||| | Sbjct 629934 CCTCCGCGCAATCGCAACACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGCTC 629875 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | |||||| || || || ||||| |||||||||||| || Sbjct 629874 AGGGTGCGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGG 629815 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||||| ||| | | | | |||| || | || |||| Sbjct 629814 ATACCTTCCTTGTC--CTGGATTTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGA 629757 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || || ||||| || || || || |||||||| Sbjct 629756 CTTCCAAGGTGATGGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 629708 >seq11 Length=377427 Score = 120 bits (132), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||| |||| | || ||| |||| || | |||||| || || || Sbjct 144675 TCCTTCTGGATGTTGTAGTCCGACAAGGTG-CGGCCGTCTTCAAGCTGCTTTCCGGCAAA 144617 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| |||||||| || ||| | || |||||||| ||||| ||| | | Sbjct 144616 GATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTT 144557 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| || ||||| || | |||||||| |||||||||||||| || || Sbjct 144556 GTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGAC 144497 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 144496 AAAGATCTGCATC 144484 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 224474 CCACCACGCAGGCGAAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 224533 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| ||||| |||||||| || ||| Sbjct 224534 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 224593 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | || || || Sbjct 224594 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACC 224653 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||||||||| ||||| || || ||||||||||||||| Sbjct 224654 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATC 224701 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 |||||||| || | ||| |||||||| ||||||||||| |||| | || || |||| Sbjct 144924 AGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCCGACAAGGTG-CGACCGTC 144866 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||| |||||||||||||| || |||||||| ||| | || ||| ||||| Sbjct 144865 CTCGAGTTGCTTTCCTGCGAAAATGAGTCGTTGCTGGTCAGGGGGGATGCCCTCTTTGTC 144806 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | || | |||| ||||| || || | |||||||| Sbjct 144805 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCAACTTCGAGGGTGATGGT 144746 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || || || ||||||||||| Sbjct 144745 CTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 144713 >seq1 Length=1046041 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| ||||||||||| || Sbjct 845833 CCACCGCGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 845774 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| || || |||||||||||| ||| Sbjct 845773 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 845714 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | |||| || || || Sbjct 845713 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 845654 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| || || || Sbjct 845653 TCAAGGGTGATGGTCTTACCTGT 845631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323033440650080