Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 105 7e-18 >seq2 Length=781092 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || || ||||| || | |||| || || ||||| ||||||||||||||| Sbjct 629934 CCTCCGCGCAATCGCAACACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGCTC 629875 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || ||||||||| |||| || || ||||| |||||||| Sbjct 629874 AGGGTGCGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGG 629815 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| || | | || | |||||||| | || ||| Sbjct 629814 ATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACT 629755 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | || || ||||| || |||||| Sbjct 629754 TCCAAGGTGATGGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCATA 629707 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || | || | ||| ||||| ||||| |||||||| ||| Sbjct 629706 CCACCACGGAGACGCAAGACAAGGTGGAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 629647 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||||||| || || || || |||| || || |||||||| || || Sbjct 629646 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGATCAGGGGGA 629587 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || ||| | | || | ||||||| | || || Sbjct 629586 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCAATGGTGTCCGACGACTCAACC 629527 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||||| || || || || || |||||| Sbjct 629526 TCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATA 629479 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 || || || |||||||| ||| || ||| | || ||||| || ||||||||| || Sbjct 630126 TCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCCTCGAGCTGCTTACCAGCAAAG 630067 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 || || || ||||| ||||| || || || || ||||| || || || | | Sbjct 630066 ATGAGTCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 630007 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | |||||| | | || ||||| | || | |||||||||||| | ||| || ||| Sbjct 630006 TCGATCGTGTCTGAAGACTCGACTTCCAACGTGATCGTCTTGCCGGTGAGTGTCTTGACG 629947 Query 143174 AATATTTGCATAGCT 143188 || || |||||| || Sbjct 629946 AAAATCTGCATACCT 629932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506952335099760