Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq11 102 7e-17 >seq2 Length=781092 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||||||||| | ||||| | ||||| |||||||||||||||||||||||||| || Sbjct 629935 ACCTCCGCGCAATCGCAACACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATC-GC 629877 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | ||||| ||||||||||| | | || | |||||||| || | Sbjct 629876 TCAGGGTGCGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAG 629817 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||||||| ||||| ||||| | || || || | |||||| Sbjct 629816 GGATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGA 629757 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || ||||| || || || ||||||||||| Sbjct 629756 CTTCCAAGGTGATGGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 629708 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/208 (70%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || |||||| ||||||||||||||||| || | || || || |||| || ||||| Sbjct 629682 TGGAGTGTGGATTCCTTTTGAATGTTGTAGTCGGA-AAGGGTGCGGCCGTCTTCGAGCTG 629624 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | |||| ||||||||||| || | | |||||||||| || || Sbjct 629623 CTTGCCGGCGAAGATTAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 629564 Query 48643 CTGCTTGATAGACG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTAC 48698 ||| | |||| | ||||| || | ||||| ||||| || ||||| || | Sbjct 629563 -GGCT---TTGACGTTGTCAATGGTGTCCGACGACTCAACCTCGAGGGTAATGGTCTTGC 629508 Query 48699 CGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| | || || ||||| |||||||| Sbjct 629507 CGGTCAAGGTCTTGACAAAGATCTGCAT 629480 >seq11 Length=377427 Score = 102 bits (112), Expect = 7e-17 Identities = 152/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || | || || || ||||||| ||||| Sbjct 224498 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCGAGCTG 224556 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || | ||||||||||| || | | |||||||||| || || Sbjct 224557 CTTACCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 224616 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | |||||| ||||| || |||||||| || Sbjct 224617 GGCCTTGACGTTGTCG--ATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTTTTGCCC 224674 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGT 48731 ||||| || || ||||| ||||||||| ||| Sbjct 224675 GTGAGGGTCTTGACAAAGATCTGCATCTTGT 224705 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| || |||||||| || | ||| || |||| || ||||| Sbjct 144688 ATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCAAGCTG 144629 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | |||||||||||| || | | |||||||||| ||| || Sbjct 144628 CTTTCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGAATCTT 144569 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | || || |||| ||||| ||||| || ||||| || ||||| Sbjct 144568 GGCCTTGACGTTGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 144509 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || ||||| ||||||||| Sbjct 144508 GAGAGTCTTGACAAAGATCTGCATC 144484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421200922747793