Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq11 82.4 7e-11 >seq2 Length=781092 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | |||||| |||| || ||| | Sbjct 629480 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCG 629539 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| ||||| |||||||| || || ||||| Sbjct 629540 GACACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 629599 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| |||||||| | | | | | | ||| || ||| Sbjct 629600 CAGCGCCTAATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCCGACTACAAC 629659 Query 24171 ATTCAAAAAGAATCTACA 24188 |||||||| ||||| ||| Sbjct 629660 ATTCAAAAGGAATCCACA 629677 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| | ||||||||| | Sbjct 629708 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACCATCACCTTGGAAGTCGAGTCTTCG 629767 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || || ||||| ||||| || |||||||| || Sbjct 629768 GACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 629827 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| || | | || ||||| ||||| |||| | | | | |||||||| ||| Sbjct 629828 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGCACCCTGAGCGATTACAAC 629887 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || || |||| | ||||| ||||| | ||||| Sbjct 629888 ATTCAAAAGGAGAGCACCCTTCACCTTGTGTTGCGATTGCGCGGAGG 629934 >seq11 Length=377427 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || || | || ||| ||||||| || || | Sbjct 144713 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAAGTTGAATCCTCC 144772 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| |||||||| ||||| || || || || Sbjct 144773 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 144832 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||| |||| || || ||||||||||| || | | | | | || || ||| Sbjct 144833 CAACGACTCATTTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCTTGTCGGACTACAAC 144892 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| ||||| || || | ||| | ||| Sbjct 144893 ATTCAGAAAGAGTCCACTCTCCATCTGGTG 144922 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| ||||| | ||||| || || | || || ||| | || ||| |||| || ||| Sbjct 224705 ACAAGATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGT 224646 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || ||||||||||| | ||||| ||||| ||||| |||||||| || || | Sbjct 224645 CCTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTG 224586 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 |||| ||| | || || | || ||| ||||| ||||| || | | | | | | || | Sbjct 224585 ATCAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACT 224526 Query 24166 ATAACATTCAAAAAGAATCTACAATTCA 24193 | ||||| || || || || || |||| Sbjct 224525 ACAACATCCAGAAGGAGTCGACCCTTCA 224498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429884686197915