Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 8e-16 seq2 87.8 1e-12 >seq11 Length=377427 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||||| | ||| || || |||||||| || ||||||||||| | | Sbjct 144711 CCACCTCGGAGACGGAGTACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAC 144652 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | || || || ||| | || || ||||| || || || Sbjct 144651 AAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 144592 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | ||| || | | | | ||||||| || ||| Sbjct 144591 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATAGTGTCGGAGGACTCGACC 144532 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||| || || |||||||| |||||||| Sbjct 144531 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 144485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || |||||||| || || ||||||||||| | | Sbjct 144939 CCTCCACGGAGACGGAGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCCGAC 144880 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||| | ||| || || || |||| || || || ||||| || Sbjct 144879 AAGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAAATGAGTCGTTGCTGGTCAGGGGGG 144820 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || || ||| || | | | | |||||| || || Sbjct 144819 ATGCCCTCTTTGTCCTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGGATTCAA 144762 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| || || |||| || ||||| || |||||||| Sbjct 144761 CTTCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 144713 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||| | | ||| | ||||||| | || Sbjct 224498 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 224557 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| || || || | ||| || ||||| || || Sbjct 224558 TTACCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 224617 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| || |||| || | |||||||||||| || | Sbjct 224618 GC--CTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTTTTGCCCG 224675 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 | || || |||||||| |||||||| ||||| Sbjct 224676 TGAGGGTCTTGACAAAGATCTGCATCTTGTA 224706 >seq2 Length=781092 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| | | ||| ||||| Sbjct 629463 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGTCCGTCC 629404 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || |||| || ||||| ||||| ||| | |||||| ||||| Sbjct 629403 TCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 629344 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | |||| || | |||||| | Sbjct 629343 TGGATCTTGGC--CTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATAG 629286 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || ||||| || |||||||| Sbjct 629285 TCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 629252 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||| ||||||||| |||||||| ||| || ||| | ||||| | || Sbjct 629910 TGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGCTCAGGGTGCGACCATCCTCGAGCTGC 629851 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || || ||||| ||||| ||| | || || ||||| |||| Sbjct 629850 TTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATTTTG 629791 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||||| | ||| ||||| ||||||||| ||||| || Sbjct 629790 GCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAAGGTGATGGTCTTTCCTGTG 629731 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| ||||||||||| Sbjct 629730 AGCGTCTTGACGAAAATCTGCAT 629708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405039651861070