Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq156 140 2e-28 seq50 123 2e-23 seq200 104 2e-17 seq2 89.7 3e-13 seq11 82.4 5e-11 >seq156 Length=1468 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1440 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1381 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1380 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1346 >seq50 Length=126904 Score = 123 bits (136), Expect = 2e-23 Identities = 202/291 (69%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 ||||||||||||| ||||| | | || ||||| |||| || ||||| |||||||| Sbjct 109775 GTTCTACCGCTACCGCATGCCCCTCCTCCAGACCAAGATCGAAGGCAAGGGCAACGGTAT 109716 Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319 || |||||||| |||||| | || |||| ||||| | || || | ||||| Sbjct 109715 CAAGACCGTCATCCCAAACATGTCCGACATCGCCCGCTCGCTCAGTCGTCCGCCTACCTA 109656 Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379 ||| || || | ||||| ||||| |||||||||||||| ||| || | || ||||| Sbjct 109655 CCCCACCAAGTTCTTCGGATGCGAGCTTGGCGCTCAGACCTCGTTCGACGAGAAGAACGA 109596 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTT 6439 |||| ||| || ||||| | || | | | | || | || | || |||||||| Sbjct 109595 CCGCTACATTGTCAACGGCGCCCACGATGCCGACCGCCTCCGTGAGCTGCTCGACGGCTT 109536 Query 6440 TATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || ||||||||| || || || ||| | || || |||||||| || Sbjct 109535 CATCGACAAGTTTGTCCTCTGCGCCGACTGCAAGAATCCAGAGACCGATCT 109485 >seq200 Length=971 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 569 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 628 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 629 CCCAATATTTAGCCTTA 645 >seq2 Length=781092 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | ||| |||||||| | ||||| ||||||||||||||||| |||||||| Sbjct 629936 TACCTCCGCGCAATCGCAACACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGC 629877 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || | || || | || || || ||||| || || || || || |||| | Sbjct 629876 TCAGGGTGCGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAG 629817 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||||| ||| || || | | || || | || | Sbjct 629816 GGATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGA 629757 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || || | || || ||||| |||||||| Sbjct 629756 CTTCCAAGGTGATGGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 629708 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || | || || ||| ||||||||||| ||||| || | Sbjct 629708 TACCACCACGGAGACGCAAGACAAGGTGGAGTGTGGATTCCTTTTGAATGTTGTAGTCGG 629649 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || | || || ||||| || |||||||| || ||||| | || Sbjct 629648 AAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGATCAGGGG 629589 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCA 38267 | | |||||| |||||| || || || || || | | || || | || ||| Sbjct 629588 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCAATGGTGTC-CGACGACTCA 629530 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| || || || |||||||| || || || |||||||| Sbjct 629529 ACCTCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 629480 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| || | || ||| | || | || |||||||||||||| || || ||||| || Sbjct 630165 TTACCGCCACGCAGACGGAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 630106 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| ||| | || || | || || || ||||| || || || || || |||| Sbjct 630105 GACAGTGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGT 630046 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| || || |||||| || || ||| ||||| | || || ||| | || Sbjct 630045 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAAGACTCG 629986 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || || || || || || | || || ||||| |||||||| Sbjct 629985 ACTTCCAACGTGATCGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 629936 >seq11 Length=377427 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | ||| | || | ||||||||| |||||| || || ||||| || | Sbjct 144713 TACCACCTCGGAGACGGAGTACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 144654 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| || | || ||||||||||| || || || || ||||| | || Sbjct 144653 ACAAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGATCAGGGG 144594 Query 38209 GGACGCCTTCTTTGTCCATAATTTT 38233 | | |||||| |||||| ||| || Sbjct 144593 GAATGCCTTCCTTGTCCTGAATCTT 144569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334907223318983