Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq11 122 9e-23 seq1 84.2 2e-11 >seq2 Length=781092 Score = 140 bits (154), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | || |||||||| | || | ||||||||||||||||| |||||||| Sbjct 629935 ACCTCCGCGCAATCGCAACACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGCT 629876 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || |||||||||||||| || ||||||||||||||||||| || Sbjct 629875 CAGGGTGCGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGG 629816 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| |||||| |||| ||| | | | |||||| || || | Sbjct 629815 GATACCTTCCTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGA 629757 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || || || |||||||| || || || ||||| Sbjct 629756 CTTCCAAGGTGATGGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 629708 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||||||||||| || || ||||| || | ||| || || | || || |||||| Sbjct 630138 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCCTCGAGCTGC 630079 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 |||||||| || ||||||||||||||||||| ||| | | |||||||||| ||| || Sbjct 630078 TTACCAGCAAAGATGAGTCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTG 630019 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 |||| | | | |||||| || || || || | |||||| || ||||| || Sbjct 630018 GCCTTGACATTGTCGATCGTGTCTGAAGACTCGACTTCCAACGTGATCGTCTTGCCGGTG 629959 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || ||||| Sbjct 629958 AGTGTCTTGACGAAAATCTGCAT 629936 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 629443 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 629384 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 629383 AATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 629325 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || ||||| |||| ||||| || ||||| || || ||||| | Sbjct 629324 TGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGAGTCTTGA 629265 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 629264 CGAAGATCTGCAT 629252 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| || | || | |||| ||||||||||| ||||| || | || || || | Sbjct 629695 ACGCAAGACAAGGTGGAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGGGTGCGGCC 629636 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || |||||||| || | || | || ||||| Sbjct 629635 GTCTTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGATCAGGGGGAATGCCTTCCTT 629576 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || ||||| ||| | | | ||||| ||| || || |||| || | Sbjct 629575 GTCCTGGATCTTGGCTTTGA-CGTTGTCAATGGTGTCCGACGACTCAACCTCGAGGGTAA 629517 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || | ||||| |||||||| ||||| Sbjct 629516 TGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 629480 >seq11 Length=377427 Score = 122 bits (134), Expect = 9e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 224509 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 224568 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| |||||||| || | || | || ||||||||| ||| || |||| ||| Sbjct 224569 GATGAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 224627 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| |||| ||||||||||||||||| || ||||| | Sbjct 224628 TGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGA 224687 Query 42196 CAAAGATTTGCATTTT 42211 ||||||| ||||| || Sbjct 224688 CAAAGATCTGCATCTT 224703 >seq1 Length=1046041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 845798 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 845739 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||||| || | | |||||||||| ||| | || | |||| Sbjct 845738 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 845680 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 | | | |||||| || ||||| || | |||||||| || || ||| Sbjct 845679 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGTT 845630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543146303963120