Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 152 5e-32 seq11 107 2e-18 seq33 100 3e-16 >seq2 Length=781092 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| ||||||||||| | || | || ||| |||||||| |||||||||| | Sbjct 629934 CCTCCGCGCAATCGCAACACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGCTC 629875 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || ||||| |||| | ||||||||| |||||||| Sbjct 629874 AGGGTGCGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGG 629815 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| |||||| ||||| ||||| | | ||||||| | |||||| Sbjct 629814 ATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGT-CAATCGTGTCCGAAGACTCGAC 629756 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || || || || || ||||||||||| Sbjct 629755 TTCCAAGGTGATGGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 629708 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| || Sbjct 629478 CCACCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 629419 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| ||||| ||| | || | |||||||| || ||||| Sbjct 629418 AGCGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGG 629359 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| ||||| | | |||||| | | ||| || Sbjct 629358 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT-CAATGGTGTCGGAAGACTCCAC 629300 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 |||| ||| | || |||||||||||||| || || || ||||||||||| Sbjct 629299 CTCGAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATGGC 629249 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| || || ||| ||| || ||||| || ||||| | Sbjct 630127 CTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCCTCGAGCTGCTTACCAGCAAA 630068 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | ||||||||| ||||| || || |||||||||||| ||| || ||||| | Sbjct 630067 GATGAGTCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 630008 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||||| | | ||||||||| | || | ||| |||||||| || || || || Sbjct 630007 GTCGATCGTGTCTGAAGACTCGACTTCCAACGTGATCGTCTTGCCGGTGAGTGTCTTGAC 629948 Query 127102 AAAAATCTGCAT 127113 ||||||||||| Sbjct 629947 GAAAATCTGCAT 629936 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | || | || || || |||||||| ||||| ||| Sbjct 629706 CCACCACGGAGACGCAAGACAAGGTGGAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 629647 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||| | ||||||||||| || || Sbjct 629646 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGATCAGGGGGA 629587 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| || |||| |||| || | |||||||| ||| || Sbjct 629586 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTG-TCAATGGTGTCCGACGACTCAAC 629528 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || |||||||||| || || ||||| |||||||| Sbjct 629527 CTCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 629480 >seq11 Length=377427 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | || ||||| || || || ||||| || Sbjct 224471 GCACCACCACGCAGGCGAAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCC 224530 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| || || ||||| || || ||| |||| | ||||||||||| || Sbjct 224531 GAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGATCAGGG 224590 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||| ||||||||| ||| || ||||| |||| |||| |||||||| ||| Sbjct 224591 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAGGACTC 224649 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | |||||||| || || || || ||||| |||||||| Sbjct 224650 CACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 224700 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| || || ||||| ||||| Sbjct 144681 GTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCAAGCTGCTTTCCG 144622 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||||| || || ||||| ||||||||| || || |||| Sbjct 144621 GCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTG 144562 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | |||||| |||| ||| | || |||||||| ||||| Sbjct 144561 ACGTTG-TCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGT 144503 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 144502 CTTGACAAAGATCTGCAT 144485 >seq33 Length=192376 Score = 100 bits (110), Expect = 3e-16 Identities = 315/481 (65%), Gaps = 14/481 (3%) Strand=Plus/Plus Query 145722 GACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGTCTT 145781 || ||||||||| |||| | | ||| || || || ||||| |||||| |||||||||| Sbjct 132766 GAGGGTGAACTGGATCGCGTTGGAGGCAGGCTTGGTACGCAGGTAGTACGTGCCGGTCTT 132825 Query 145782 GAGCTGTTTCTGCCACGTGTAAAAGTGTAT---GCTCGACATGACCGAGTACGTGGGTTC 145838 ||| |||| ||| ||||||||| || | | || ||||||| ||||||| | Sbjct 132826 GAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAGGT-GAGCTGACCGA--ACGTGGGCGC 132882 Query 145839 GGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCAT 145898 | || | || || || || ||| ||||||| | | |||||||| ||||| Sbjct 132883 CGAGAGGTGGATGTTGAGCGACTGCGACTGGCAGATGAAAGCACCACGGTCGGCAGCCAT 132942 Query 145899 GTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTG 145958 ||| || ||| ||| | || ||||| | || || | || | ||||| | | | Sbjct 132943 GTCGATGATGGCCTTCTGGCTGATCTCCCAGACAGTCTTGTACAGCTTCTTGATGCGGTC 133002 Query 145959 GGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTC 146018 ||| || || | |||||| | || || | ||| | || ||| || | Sbjct 133003 GGGGATGCCGGGCACGTTCTGGATGGAACCGCCGTGGGCGATGATGCGGTTCTTCA-TCG 133061 Query 146019 TGGAGTGTAAATGTTCAAG-TCTACGAGGGCCTTGATGAGATACT---GGTTGACCACCT 146074 || || | | | | || ||||| || | || || |||||||||||| Sbjct 133062 TGTCGTTCCACAGACCCTGCTCGACGAG---CTCGCGAAGCAACCAGGGGTTGACCACCT 133118 Query 146075 GAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACT 146134 | || || |||||||| || || | | || | |||| ||| |||||||||| ||| Sbjct 133119 GGAATTCACCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTACGGCTCGAAGCACT 133178 Query 146135 CGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGT 146194 ||||| ||||| ||||| |||| ||||||||||||| ||||| ||||| |||| Sbjct 133179 CGTTGAAGCCGAGGATCTGACTGGTCGAAGCGGTAGGCATGGGCGCCAACAGCAGCGAGT 133238 Query 146195 T 146195 | Sbjct 133239 T 133239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475442592758320