Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq33 194 2e-44 seq10 147 3e-30 seq62 123 3e-23 seq39 91.5 2e-13 >seq33 Length=192376 Score = 194 bits (214), Expect = 2e-44 Identities = 897/1400 (64%), Gaps = 45/1400 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| |||||| ||||| |||||||| ||| || | ||| || || || Sbjct 133148 TAGATGTTGGACGTGTACGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTGGTCGAA 133207 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC- 116021 || || |||||||| |||| || || |||||||||||| | || ||| || Sbjct 133208 GCGGTAGGCATGGGCGCCAACAGCAGCGAGTTGCGGAGACCGTGCT---TA--GCGATCT 133262 Query 116022 ----CTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTCTCCCCCTCCCACATATC 116072 |||||| | ||||||| | || | || || | |||| |||| || Sbjct 133263 TGGTCTTGAGCTCAGCCCAGTCCCACAGGTCGGAAGGCGTGACGCCCC-----ACATGTC 133317 Query 116073 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 116132 |||| || || || || || ||||| || | | ||||| || | ||| | | Sbjct 133318 GTACTGCAGCTCGCCCTGCGAGGCGGGCGAGCCTGCGTAGGTCTCGTAGGTGCCGTGCTC 133377 Query 116133 CTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 116191 || |||| ||| | | |||| |||||||| ||||| || || ||||| || || | Sbjct 133378 CTGGGCCAGCTCGCACGATCGC-TCGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCA 133436 Query 116192 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGCACAAA-ATAAATACATC 116249 | || | |||||| || || || ||| || | || | || || | || Sbjct 133437 CGTTGAGACGGCGAGCCTCGGGCGATTCGAAGGCGTAGCC--CATGATCATGAAGGCGTC 133494 Query 116250 CGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGT 116309 |||||||| |||||||||| ||| || |||||||| | ||| || ||| | || || Sbjct 133495 GGCGAGACCCTGGACACCGATGCCGATAGGGCGATGGCGCATGTTGGACCTGCGGGCCTC 133554 Query 116310 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369 ||| ||||| || | || | ||||| | | | || || || ||| || |||| | Sbjct 133555 CTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTCTTGCAGATGGCCTTGGC 133614 Query 116370 GATTTCATGAAGCTTTTCGTAATC--AAAACTGCGAGTCTCT-TCATTGACATACTTAGG 116426 || || || | | | || | | || | | | || ||| | | || Sbjct 133615 GACACTGTGGAGGCGCTTGAAGTCGTAGACCTTGGTGACGGGGTCGATGA---AGGTGGG 133671 Query 116427 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 116486 |||||| || || || || || || || | | ||| || | | ||||||| || || Sbjct 133672 AAGGGCAATGGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGAGCGCTGTACTCGATGAT 133731 Query 116487 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 116546 || || |||| || || | ||| || ||||| | |||||| || || |||| ||| Sbjct 133732 CTCGGTGCACAGGTTGGAGCACTTGATAGTGCCGAGGTTCTTCTGGTTGCTCTTTCGGTT 133791 Query 116547 ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 || ||||||||||| || | || | || ||||| || || |||| ||| || || Sbjct 133792 GGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCTGTCTGCGACTCGAGGATGGC 133851 Query 116607 CTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTG 116665 | ||| | | || ||| || | || ||| |||| || ||||| ||||||| Sbjct 133852 GTACCAGAGCTTCTGCGCCTTG-ACGGTGCGCTTGGAGCGACCCTCGGCCTCGTAGCGCT 133910 Query 116666 TGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGA 116724 ||||||| ||| ||||| || || ||| || | ||| || || || | || Sbjct 133911 CGTAGAGGCGCTCGAACTCGTC-GCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGG 133969 Query 116725 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 116784 || | ||| ||||| | || || ||| |||| |||||||||||| || || | |||| Sbjct 133970 CACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGCACCCAG 134029 Query 116785 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 116844 ||||| ||||||| || ||| || | ||||| | || || || || | || Sbjct 134030 AGCGCGTAGAAGAGCTCACGAGCACGCACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCA 134089 Query 116845 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG- 116903 | || || | | |||| |||||| || || | ||| | |||| | || ||| Sbjct 134090 AGGAACTCGAACACGTCCGAGTGCCATGGCTCGATGTAGATGGCGAAGGCACCGGGGCGC 134149 Query 116904 --ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 ||| |||||| || || | ||| || ||| || ||||| ||||| || | | Sbjct 134150 TTGTTGCCACCCTGGTCAACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGGACG 134209 Query 116962 ATACCAT--CAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGT 117019 ||||||| | || || || || || ||| || | | | | || || Sbjct 134210 ATACCATTGCTGA--CACCGTTGGTGCCGGCAATGTAGGATCCGGTACCGCGGATGCAGT 134267 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 |||||| | || ||||| || || ||| ||||| || ||| | |||| || Sbjct 134268 GGATGTTGAGGCCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGT 134327 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTG 117139 ||||||| || ||||||||||| |||| | | || |||||||| ||| | || | Sbjct 134328 CGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGACAAGGAAGCACGACGAGAGCTGCG 134387 Query 117140 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGAC 117198 | ||| |||||||||||||||||||| || | |||||| |||| ||| ||| ||| Sbjct 134388 GGTGTGGGGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTGAA-GTACTTTTGCGAC 134446 Query 117199 ATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACC 117258 || | ||| ||||| | | | ||||| | ||||| || |||| | ||| Sbjct 134447 ATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATTCCGACGGCGACA 134506 Query 117259 CGCATAAACATGTATTgggg 117278 ||||| | ||||| ||||| Sbjct 134507 CGCATGAGCATGTGCTGGGG 134526 >seq10 Length=380723 Score = 147 bits (162), Expect = 3e-30 Identities = 268/386 (69%), Gaps = 16/386 (4%) Strand=Plus/Minus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || || || |||||| || || | |||| ||||||||| || ||||| || Sbjct 327801 CTTGAGCAGCGACGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCTTTGATGTGCGA 327742 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || ||||| ||||| | |||| Sbjct 327741 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTAGCGCAAGCT-GTTGACAT 327683 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | |||| | ||| || || |||||||| | |||| ||||| | |||| || | Sbjct 327682 CGAGATACTGCTTGCCGTGCTGAAGACCAAGGATCTCCTTGATGGCCTTGATTTCGGCAT 327623 Query 176775 T-----TGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAG 176829 | |||| ||| | | || || || || || || || ||| || ||||| Sbjct 327622 TCTTCATGATCTGA-TCGTGC----GAGGCTTCTCGCACGTTGAGGAGCTTACCACGGAG 327568 Query 176830 AGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTT 176889 ||||| |||||||| | || || || ||| | || |||||| || ||||| | ||| Sbjct 327567 CGGGAAAACACCGTAATTGTCTCGTCCGACCTCGACGATACCAGCCACAGCGAGCGACTT 327508 Query 176890 CGCGGAATCACCCTCCGTCACGATGAGCGTACA--CTTTCCAGATTGTGCCGTCCCCGCC 176947 || |||||||| ||||| | |||||||||||| |||| | |||| || || Sbjct 327507 GGCCGAATCACCTTCCGTGAGGATGAGCGTACAATCTTTGGCCTTCCTGCC--ACCGGCG 327450 Query 176948 TTGTTCGCATCGTCCAACTTGGGAAT 176973 ||||| ||||| || | |||||| || Sbjct 327449 TTGTTGGCATCTTCGAGCTTGGGGAT 327424 >seq62 Length=98030 Score = 123 bits (136), Expect = 3e-23 Identities = 304/454 (67%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 127230 CGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCA 127289 |||| || ||||| ||||||||||||||| ||||| || | | |||||| ||||||| Sbjct 36857 CGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCTTGCAAGCTGATGTTCTCCA 36916 Query 127290 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTT--GGCACCCCAATCTGTTTGAGGAG 127347 |||| || || ||||| ||| | || | || || || | | | || Sbjct 36917 TAAAGTCGAAGGGGTTTGTTGCG--CCGTAGTGAACAGGGTTGCCGAGCGAGACCAAAAG 36974 Query 127348 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 127407 || || | |||||||| ||||| | | ||| | | | |||||| ||||| | | | Sbjct 36975 GCGGTCTGCAACGTACTCGATGTATTGACGCATGAGCGCGGCGTTCATGCCGATCAAGCT 37034 Query 127408 -ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG 127466 ||| || | ||||| || ||| ||||||| || || || || || | | ||| Sbjct 37035 GACA-GGCAATGCGTCTGTGAGGAAGGCCTTCTCGATCTCGACGGCCTCGCTGATGATCT 37093 Query 127467 CGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCT-TGAAGAGTTCCACAGCAAAC 127525 | | | ||||| | | || | | | || ||||||| ||||| Sbjct 37094 TGAGCACCGTGTCGGGGTGTGCGCGCTT-CTTGAGGTGGCTGAAGAGGAGGCAGGCAAAG 37152 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| |||||||||||||| |||||||| || || |||||| ||||| |||||| Sbjct 37153 TCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATG 37212 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 ||||| |||||||| | |||||| || | || || |||||||||||||| ||||| Sbjct 37213 AGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCAGAGAAGAAGATGCCCTCG 37272 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || || || | |||||||| ||||||| Sbjct 37273 ACGGCAGCAAAGGCGATGAGACGCTCTGCAAAGG 37306 >seq39 Length=164988 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT---TGATTTTCACGGGC 12928 |||||||| |||||| || || || ||||| | ||| ||||| || || | ||| Sbjct 66753 CTTACCGATGGCGTCGATCTCATCGATGAAGATGATGCACGGAGCGTGCTTCTT---GGC 66697 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 | || || ||||| |||| ||| ||||||||| ||||||||||| ||||| | Sbjct 66696 GTTGGCGAACATGTCTCGGACTCGGCTGGGACCGACACCGACAAACATCTCGACAAATTC 66637 Query 12989 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 || ||||| || |||||| ||| | ||| || ||| |||| ||| || || Sbjct 66636 GGAACCGGAAACGGAGAGGAAGGGTACGGCAGCTTCGCCGGCGGTGGCCTTGGCCAGCAG 66577 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 ||||| || || || || || | ||| | |||||| || |||||| | ||||| Sbjct 66576 CGTCTTACCGGTACCGGGGGGGCCAGAGAGGATGGCACCGCGCGGGATCTTTGCACC 66520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613432099049880