Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq11 143 6e-29 seq2 129 1e-24 seq1 122 2e-22 seq369 114 3e-20 >seq11 Length=377427 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || |||||||||||||| |||| ||||||||| | ||| || | || ||| Sbjct 144696 AGTACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCT 144637 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| ||||||||||||||||| || || ||| ||||| ||| Sbjct 144636 TCAAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 144577 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | ||||| | | || || || | ||||| ||| Sbjct 144576 TGAATCTTGGCCTTGACGTTGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 144517 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || ||||| || || Sbjct 144516 TTGCCGGTGAGAGTCTTGACAAAGATCTG 144488 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| | | || | || || Sbjct 224489 AGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 224548 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| |||||||| || || ||| ||||| ||| Sbjct 224549 TCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 224608 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| || Sbjct 224609 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTT 224668 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| || || Sbjct 224669 TTGCCCGTGAGGGTCTTGACAAAGATCTG 224697 >seq2 Length=781092 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| |||| ||||||||| | | || | ||| || Sbjct 629463 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGTCCGTCC 629404 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||| ||||||||||||||||| ||| || || || ||| Sbjct 629403 TCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 629344 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 629343 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 629284 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 629283 TTGCCGGTCAGAGTCTTGACGAAGATCTG 629255 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||| |||| ||||||||| | || || | ||||| Sbjct 630147 AGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCC 630088 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| ||||||||||| || || || || ||| Sbjct 630087 TCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCC 630028 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||||| | || || ||||||||||||||| Sbjct 630027 TGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAAGACTCGACTTCCAACGTGATCGTC 629968 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || Sbjct 629967 TTGCCGGTGAGTGTCTTGACGAAAATCTG 629939 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || |||||||||||| || || |||||||| | ||||||||| | | || Sbjct 629700 CGGAGACGCAAGACAAGGTGGAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGGGTG 629641 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| ||||||||||| || |||||||| || || ||| ||| Sbjct 629640 CGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGATCAGGGGGAATGCCT 629581 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| || ||| || | |||||| | | || || || | Sbjct 629580 TCCTTGTCCTGGATCTTGGCTTTGACGTTGTCAATGGTGTCCGACGACTCAACCTCGAGG 629521 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || ||||| || || Sbjct 629520 GTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTG 629483 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| || || ||||||||| | |||||| || || || | ||||| || Sbjct 629916 ACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGCTCAGGGTGCGACCATCCTCG 629857 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || |||||||| ||||||||||| ||| || ||||| ||||| Sbjct 629856 AGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGG 629797 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || || ||| ||| || | ||||| | | || || ||||| ||||| ||||| Sbjct 629796 ATTTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAAGGTGATGGTCTTT 629737 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || ||||| || Sbjct 629736 CCTGTGAGCGTCTTGACGAAAATCTG 629711 >seq1 Length=1046041 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||||||||| ||||||||||| |||| ||||||||| | | || Sbjct 845827 CGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 845768 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| || ||||||||||| || || || Sbjct 845767 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCC 845708 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| |||||| | | || || || | Sbjct 845707 TCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 845648 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| |||||||| || Sbjct 845647 GTGATGGTCTTACCTGT 845631 >seq369 Length=523 Score = 114 bits (126), Expect = 3e-20 Identities = 131/170 (77%), Gaps = 16/170 (9%) Strand=Plus/Minus Query 43091 CCTTTTAGTCTCTGAACCTTTT-CTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATC 43148 || ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| Sbjct 329 CCATTTAGTCTCTGAACCTTCCACTTCTTGCGAAGAGGCTTGGCTGCGGATTGTCCAATC 270 Query 43149 CTCAACATTTTTACCATACCC-ACGCCATTACGCT--TGGTGCA-----ACTCTTTCGA- 43199 | | |||||||||||||| | ||||||| || || |||| | ||| ||| Sbjct 269 TCTAGCGTTTTTACCATACCCGAGGCCATTAACCTGGTGCTGCACCCCTAATCTCACGAT 210 Query 43200 ---GAAGCGGTAGTTGAGGCTCTAAGGAGTTTCCCGCAATTTGAGGATGT 43246 | ||||||| | |||||||||||||||||||||||| |||||| Sbjct 209 GGGGCCGCGGTAGCTAGAGCTCTAAGGAGTTTCCCGCAATTT--GGATGT 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178773677391131