Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq33 237 1e-57 seq2 93.3 4e-14 seq11 84.2 2e-11 >seq33 Length=192376 Score = 237 bits (262), Expect = 1e-57 Identities = 1009/1553 (65%), Gaps = 71/1553 (5%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCT-GAGATACACATTGCTAGTGAAAGG 146951 |||||||| || || || || || |||||||| | ||| || | ||| ||| | || Sbjct 133109 TTGACCACCTGGAATTCACCGGCGAGCACACGACGCGAG-TAGATGTTGGACGTGTACGG 133167 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || |||| || ||| | || || || | |||||||||||| ||||| Sbjct 133168 CTCGAAGCACTCGTTGAAGCCGAGGATCTGACTGGTCGAAGCGGTAGGCATGGGCGCCAA 133227 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 || || || || || ||||||| | | ||| ||| ||| | ||||||||| Sbjct 133228 CAGCAGCGAGTTGCGGAGACCGTGCTTAGCGATCTTGGTCTTGAGCTCAGCCCAGTCCCA 133287 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 || ||| || ||||| ||| ||||||||||||||| ||| | || | |||||| Sbjct 133288 CAGGTCG--GAAGGCGTGACGCCCCACATGTCGTACTGCAGCTCGCCCTGCGAGGCGGGC 133345 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGC 147189 ||| ||| | || |||| | |||| ||| |||| || || | |||||| Sbjct 133346 GAGCCTGCGTAGGTCTCGTAGGTGCCGTGCTCCTGGGCCAGCTCGCACGATCGCTCGAGG 133405 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGG-TCGCTTC-TTCGCTCT 147247 || | | ||| ||||| ||| ||| || ||| | ||||| || || || | | Sbjct 133406 GCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTGA-GACGGCGAGCCTCGGGCGAT-T 133463 Query 147248 CGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 || ||||| || | || | || ||||| ||||| | |||||||| ||||| ||||||| Sbjct 133464 CG-AAGGCGTAGCCCATGATCATGAAGGCGTCGGCGAGACCCTGGACACCGATGCCGATA 133522 Query 147307 GGTCGAT---GCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363 || |||| || | | | ||||| | | |||| | ||| |||| |||| || Sbjct 133523 GGGCGATGGCGCATGTTGGACCTGCGGGCCTC-CTCG--ACGGGGTAGTAGTTGATGTCG 133579 Query 147364 ATAATCTTGTTGAGGTT-ACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422 || |||||||||||||| ||| | | || | | | | ||| || ||| || Sbjct 133580 ATGATCTTGTTGAGGTTCTTGCA-GATGGCCTTGGCGACACTGTGGAGGCGCTTGAAGTC 133638 Query 147423 ATAAGTCCCGTCTTCGACACGTACGCAT--TGGT--TCACGGCGATAGACGCCAGATTGC 147478 | || || | ||| | || || ||| | ||| || || || || |||| Sbjct 133639 GT-AGACC--TTGGTGACGGGGTCG-ATGAAGGTGGGAAGGGCAATGGAGGCAAGGTTGC 133694 Query 147479 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATT 147538 ||||||| ||| |||| ||||||||| | ||| |||| |||||||||| ||| | Sbjct 133695 AGACGGCGACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTGCACAGGTTGGAGCACT 133754 Query 147539 TTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGT 147598 | || || | || | ||| ||||| || || ||| ||||| ||| |||| ||| Sbjct 133755 TGATAGTGCCGAGGTTCTTCTGGTTGCTCTTTCGGTTGGCAGCGTCCTTGTAGAGGATGA 133814 Query 147599 ACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGC 147657 | || ||||||||| |||| || | ||| | || || | |||||| Sbjct 133815 AGGGGTTGCCGGTCTCTGTCTGCGACTCGAGGAT-GGCGTACCAGAGCTTCTGCGCCTTG 133873 Query 147658 ACCCGCTGCCGAT--AGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGT 147715 | || ||| | |||| |||||| ||||| |||||||| | ||||| ||||||| Sbjct 133874 A--CGGTGCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCGAACTCGT 133931 Query 147716 CGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGT 147775 |||||||||| ||||| || ||||| |||| | || ||||| |||||||| | ||| Sbjct 133932 CGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 133991 Query 147776 CCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCG 147835 | | || | ||| || ||||| |||||||| |||||||| | || || || | Sbjct 133992 TCTGCTCGACCCTCTTCATGAAGAGATCGGGCACCCAGAGCGCGTAGAAGAGCTCACGAG 134051 Query 147836 CTTTGCA----ATCCTCGGCGCCCATGTTGCGTTTCAAATTAA-GCACGCTATAGATGTC 147890 | ||| |||| || | ||||| | | || | || | | | | ||| Sbjct 134052 C-ACGCACCTCTTCCTTTCCGTGGTTCTTGCG---GAGGTCAAGGAACTCGA-ACACGTC 134106 Query 147891 GGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTC 147947 | |||||| || || ||||||| ||| | ||||| ||| || || |||||||| Sbjct 134107 CGAGTGCCATGGCTCGATGTAGATGGCGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTC 134166 Query 147948 GACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCC---GCTCGCAGT 148004 || | |||| | ||||||| || ||||| | |||||| | | || ||| || Sbjct 134167 AACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGGACGATACCATTGCTGACA-- 134224 Query 148005 GCCGTTGGT----GGAAT---TGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAA 148057 |||||||| | ||| |||| | | |||||| ||| ||| | ||| | Sbjct 134225 -CCGTTGGTGCCGGCAATGTAGGATC-CGGTACCGCGG--ATGCA----GTGGATGTTGA 134276 Query 148058 CGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGAT 148115 ||| || || ||| || ||| || || || ||| || | | || |||||| Sbjct 134277 GGCCGATACCACCGGCGGTCTTGGAGAT--CATGGCACACGTCTTGAGCGTGTCGTAGAT 134334 Query 148116 GCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG 148175 ||||||||| ||||| || | | | | || ||||| | | ||||| | Sbjct 134335 GCCGTCGATCGAGTCGTCCTTCATGGTGACAAGGAAGCACGACGAGAGCTGCGGGTGTGG 134394 Query 148176 CGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCG 148235 || || || ||| |||||||| ||||| || || | ||||| ||| | | Sbjct 134395 GGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTTTGCGACATGAGGTT 134454 Query 148236 ATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAG 148295 |||||||| || ||| |||||||| | |||||| || || | ||||| |||||||| Sbjct 134455 GTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATTCCGACGGCGACACGCATGAG 134514 Query 148296 CATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAG 148355 ||||||||| || || || || || | |||||| ||| || || | ||||| Sbjct 134515 CATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAACGCTCGAG 134574 Query 148356 GGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||| ||| | || ||| | ||||| | || || ||||||| |||||||| Sbjct 134575 GGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCG 134627 >seq2 Length=781092 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| ||||| || | || | | | ||| |||||||||||||| ||||||| ||| Sbjct 629928 CGCAATCGCAACACAAGGTGAAGGGTGCTCTCCTTTTGAATGTTGTAATCGCTCAGGGTG 629869 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| |||||||| ||||| | | |||| || ||||| || || ||||| || ||| Sbjct 629868 CGACCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGGATACCT 629809 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||||| || | | || | || || | | ||| ||||| | Sbjct 629808 TCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAAG 629749 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | |||||||||||| Sbjct 629748 GTGATGGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 629708 >seq11 Length=377427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| || ||||| ||||| || |||| | Sbjct 144678 GACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCA 144619 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || |||||||| || || ||| || || | Sbjct 144618 AAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACG 144559 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| |||| | ||| || |||| || | || || || || ||||| || Sbjct 144558 TTGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 144499 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 144498 ACAAAGATCTGCAT 144485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476552856831480