Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 seq11 131 1e-25 seq1 93.3 4e-14 >seq2 Length=781092 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | ||||| || || || || |||| Sbjct 629480 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCG 629539 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || || ||||| |||||||| || || ||||| Sbjct 629540 GACACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 629599 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| |||| | ||||||||| || | |||||| | ||| ||||||| |||||| Sbjct 629600 CAGCGCCTAATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCCGACTACAAC 629659 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || | || |||||| | || ||||| || Sbjct 629660 ATTCAAAAGGAATCCACACTCCACCTTGTCTTGCGTCTCCGTGGTGGTAT 629709 Score = 140 bits (154), Expect = 3e-28 Identities = 173/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| || || || ||||||||||||||| |||| || || || ||||| | Sbjct 629249 GCCATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCT 629308 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | ||||| | ||||| || || || ||||| || ||||| || || || Sbjct 629309 TCCGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGAC 629368 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTA 27163 || |||||| | || | |||||| || || | || ||| | ||| || | || || || Sbjct 629369 CAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTCGAGGAC-GGACGAACGCTCTCGGACTA 629427 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||||||| | || ||||| | ||| | || ||||| || Sbjct 629428 CAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 629481 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || | ||||| || | || Sbjct 629708 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACCATCACCTTGGAAGTCGAGTCTTCG 629767 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| ||||| || ||||| ||||| || || ||||| || Sbjct 629768 GACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 629827 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || | || || || ||| | |||||||||| Sbjct 629828 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGCACCCTGAGCGATTACAAC 629887 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| ||| | || | || ||||| ||||| || || || Sbjct 629888 ATTCAAAAGGAGAGCACCCTTCACCTTGTGTTGCGATTGCGCGGAGGTAT 629937 >seq11 Length=377427 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||||||| | || || || || || || | ||| Sbjct 144485 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 144544 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| |||||||| || || ||||| Sbjct 144545 GACACTATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCTGATCAG 144604 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || | |||||| | ||| | || || |||||| Sbjct 144605 CAGCGTCTCATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGCACCTTGTCGGACTACAAC 144664 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | ||| | || | ||| | || ||||| || Sbjct 144665 ATCCAGAAGGAGTCGACTCTTCATCTCGTACTCCGTCTCCGAGGTGGTAT 144714 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || ||||| | || || || || ||||| | || Sbjct 224700 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGTCCTCG 224641 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| |||||||| || || ||||| Sbjct 224640 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 224581 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || || | || ||| | ||| |||| || |||||| Sbjct 224580 CAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 224521 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | || | || | || |||| ||||| Sbjct 224520 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTTCGCCTGCGTGGTGG 224474 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || ||||| ||| | ||| Sbjct 144713 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAAGTTGAATCCTCC 144772 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || |||||||| ||||| || || || || Sbjct 144773 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 144832 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| || || ||| | || ||| || ||| | || || |||||| Sbjct 144833 CAACGACTCATTTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCTTGTCGGACTACAAC 144892 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || | ||| |||| | ||| | || || || Sbjct 144893 ATTCAGAAAGAGTCCACTCTCCATCTGGTGCTCCGTCTCCGTGGAGG 144939 >seq1 Length=1046041 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | || || ||||| ||||| | |||||| | || || | ||||| Sbjct 845631 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGGCC 845690 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| || || || || ||||| || ||||| | || | |||||| || Sbjct 845691 AAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 845750 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | ||| |||| || |||||||| || |||||||||||| | || Sbjct 845751 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 845810 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | ||| | || ||||| || Sbjct 845811 CTTGTCCTCCGTCTTCGCGGTGGTAT 845836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434865160551360