Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20hubeiensis_20[genbank_20GCA_5F001736105.1_202016-09-20] 9,793 sequences; 21,322,328 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11 150 4e-31 seq2 150 4e-31 seq1 140 8e-28 >seq11 Length=377427 Score = 150 bits (166), Expect = 4e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | ||||| || || ||||||||||| || ||| ||| ||| Sbjct 144716 CAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAAGTTGAATCCTCCGAC 144775 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| ||||||||||| || ||||| || ||||||||| Sbjct 144776 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAGCAA 144835 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| || ||||| ||||| || ||||| || || | || |||| | || || ||| | Sbjct 144836 CGACTCATTTTCGCAGGAAAGCAACTCGAGGACGGTCGCAC-CTTGTCGGACTACAACAT 144894 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || ||||| || Sbjct 144895 TCAGAAAGAGTCCACTCTCCATCTGGT 144921 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || ||||| ||||||||||||||||| ||| ||| Sbjct 224697 CAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGTCCTCGGAC 224638 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| || || || || ||||| Sbjct 224637 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGCAG 224578 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || ||| | || || ||| || Sbjct 224577 CGCCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATC 224518 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 224517 CAGAAGGAGTCGACCCTTCACCTCGT 224492 Score = 141 bits (156), Expect = 2e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| || || || |||||||||||||| || ||| ||| Sbjct 144488 CAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGAC 144547 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| ||||| || || || || ||||| Sbjct 144548 ACTATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCTGATCAGCAG 144607 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || ||||| |||||||| ||||| ||||| || | || |||| | || || ||| | Sbjct 144608 CGTCTCATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGCAC-CTTGTCGGACTACAACAT 144666 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || ||||| || Sbjct 144667 CCAGAAGGAGTCGACTCTTCATCTCGT 144693 >seq2 Length=781092 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || ||||||||||||||||| || ||| Sbjct 629255 CAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 629314 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || |||||||| |||||||| Sbjct 629315 ACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 629374 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||| |||||||| || ||| | || || | || || ||| || Sbjct 629375 CGTCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACGCTCTCGGACTACAACATC 629434 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 629435 CAGAAGGAGTCGACCCTCCA-CTTG 629458 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || || ||||||||||| || || ||| Sbjct 629483 CAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCGGAC 629542 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| |||||||| ||||| || || || || ||||| Sbjct 629543 ACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGCAG 629602 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||||||||| || | || ||| |||| || ||| | Sbjct 629603 CGCCTAATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCCGACTACAACATT 629662 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| ||||| ||||| || ||||| ||| | ||| Sbjct 629663 CAAAAGGAATCCACACTCCACCTTGTCTTGCGTCTC 629698 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||||||||| || |||||| | || || || || ||| Sbjct 629711 CAGATTTTCGTCAAGACGCTCACAGGAAAGACCATCACCTTGGAAGTCGAGTCTTCGGAC 629770 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || |||||||| ||||| |||||||| |||||||| Sbjct 629771 ACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCCGACCAGCAG 629830 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| ||||| | || || |||||| ||| | Sbjct 629831 CGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGCACCCTGAGCGATTACAACATT 629890 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||| || || || || ||||| ||| || Sbjct 629891 CAAAAGGAGAGCACCCTTCACCTTGTGTTGCGA 629923 >seq1 Length=1046041 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| || || |||||||| |||||||| || ||||||||||| || ||||| Sbjct 845631 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGGCC 845690 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| || |||||||| || || ||||||||||| || Sbjct 845691 AAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 845750 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || ||| | || || ||| |||| || || || || || || Sbjct 845751 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 845810 Query 178125 CTTGT 178129 ||||| Sbjct 845811 CTTGT 845815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203580164460842