Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq144 127 2e-24 seq33 111 2e-19 seq62 96.9 4e-15 seq24 87.8 2e-12 >seq144 Length=29207 Score = 127 bits (140), Expect = 2e-24 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| ||| |||||| || || ||||| || | || || || | || || Sbjct 8165 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCATCTTCC 8106 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||| ||||||||||| ||||| ||||||||||||| || | | |||||||||| || Sbjct 8105 AACTGTTTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC-TG 8047 Query 43095 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | |||| | |||| ||| | | | |||||| || ||||| |||| |||||||| | Sbjct 8046 AATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCT 7988 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || ||||| |||||||| ||||| Sbjct 7987 TACCGGTCAGAGTCTTGACAAAGATCTGCAT 7957 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | ||||| | ||| | || | ||||||||||| || || ||||| || | Sbjct 8867 CCTCCGCGCAAACGAAGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 8808 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | ||||||||| || || || || ||||||||||| | || Sbjct 8807 AGGGTGCGACCATCTTCCAACTGCTTACCTGCAAAGATAAGACGCTGCTGGTCAGGGGGG 8748 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| | || | |||| | | | |||||| || || || Sbjct 8747 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAGGACTCGAC 8689 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || ||||| |||||||||||||| Sbjct 8688 TTCCAATGTGATGGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 8641 Score = 107 bits (118), Expect = 2e-18 Identities = 173/242 (71%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 42945 TTGTCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATA 43004 ||| |||| | ||||| | | |||||| || | ||||| ||||||||||| || || Sbjct 9108 TTGGCCTAGTTGCCTCCACGGAGACGCAAGACAAGGTGCAAAGTGCTCTCCTTCTGGATG 9049 Query 43005 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 43064 ||||| || | || || || |||| || | ||||||||| || || || || |||||| Sbjct 9048 TTGTAGTCCGAGAGGGTGCGACCGTCTTCCAACTGCTTACCTGCAAAGATAAGACGCTGC 8989 Query 43065 TGGT-CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTG 43121 |||| | | || | |||||||| | ||| | || | |||| ||| | | | ||| Sbjct 8988 TGGTCCAGGGGGAATATCCTCCTTGT-CTTGAATCTTGGCCTTGA-CGTTGTCAATGGTG 8931 Query 43122 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 || ||| || || |||| ||||| || || || || |||||||| |||||||| ||| Sbjct 8930 TCCGACGACTCAACCTCGAGGGTGATCGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGC 8871 Query 43182 AT 43183 || Sbjct 8870 AT 8869 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||||||||| ||||| || | || || || |||| || || ||||| ||| Sbjct 8609 GTGCTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTTCGGCCGTCCTCAAGTTGCTTTCCA 8550 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || ||||| || ||||| || | || | || ||||||||| ||| || || Sbjct 8549 GCAAAGATGAGGCGTTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 8490 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | || || || || || |||| || ||||| ||||| || || || Sbjct 8489 A-CGTTGTCGATGGTATCAGAAGACTCGACCTCGAGAGTAATGGTCTTGCCTGTAAGGGT 8431 Query 43166 CTTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 8430 TTTGACGAAGATCTGCAT 8413 >seq33 Length=194022 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || ||||||||||| ||||| Sbjct 184306 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCATCTTCGAGCTGCTTACCGGCGAA 184247 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| || | || | || ||||||||| ||| || |||| ||| Sbjct 184246 GATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 184188 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | |||||||| |||||||| || ||||| | Sbjct 184187 TGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTAA 184128 Query 43171 CAAAGATTTGCATTTTTA 43188 ||||||| ||||| |||| Sbjct 184127 CAAAGATCTGCATCTTTA 184110 >seq62 Length=118391 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||||||||| || Sbjct 71447 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 71506 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | | |||||| ||| ||| | || | |||| || Sbjct 71507 GATAAGACGCTGCTGGTCAGGTGGGATACCCTCCTTATCC-TGAATCTTGGCCTTGA-CG 71564 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| || || || |||| |||||||| ||||| || || ||||| Sbjct 71565 TTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 71624 Query 43170 ACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 71625 ACAAAGATCTGCAT 71638 >seq24 Length=214592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 73403 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 73462 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | | |||||||||| || | || | | | ||| Sbjct 73463 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC-TGGATCTTGGCCTTAACGT 73521 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 | | | |||||| || ||||| || | |||||||| || || ||| Sbjct 73522 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGTT 73571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571725823275200