Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq81 327 1e-84 seq69 187 2e-42 seq144 122 8e-23 seq62 104 2e-17 seq33 87.8 2e-12 >seq81 Length=91273 Score = 327 bits (362), Expect = 1e-84 Identities = 1224/1893 (65%), Gaps = 68/1893 (4%) Strand=Plus/Minus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 || ||||| | ||||| | || || ||||| || | || || | || ||||| ||| Sbjct 58086 GTGAACTGCACAGCGTTGGATGCTGGCTTGGTACGCAAGTAGTAGGTACCGGTCTTGAGA 58027 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 ||| ||||||| |||| || || ||||| || | | || || | || || | Sbjct 58026 CCCTTCTTCCAACCGTAGAAGTGCATCGAAGTGAGCTGACCGAAAGTAGGTGCCGACAAG 57967 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATC 22294 | | |||| |||||| ||| ||| || || || || ||||| ||||| | || Sbjct 57966 TGGATGTTGAGCGACTGCGACTGGCAGATGAAAGCACCACGGTCGGCCGCCATGTCGATG 57907 Query 22295 AATGTACGCATC-GAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGT 22351 | || | || ||| || ||||| ||||||||||| || | | |||| ||||| Sbjct 57906 A---TAGCCTTCTGACTGATCTCCCAAACGGTCTTGTAGAGCTTCTTGAT-----ACGGT 57855 Query 22352 -ATCGATTC---GATCCT-CTGGA-CGGACC--CGTTATTGTGTATGATCAAATTTTTAA 22403 | ||| | || | | ||| | || ||| ||| | | ||||| || || | Sbjct 57854 CAGGGATACCGGGAACGTTCTGAATCGAACCACCGTGAGCG---ATGATACGGTTCTTCA 57798 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAA----TCTTTGACCAGATGACGGTTCACC 22459 | || |||||||| | ||| | || |||| || || || | |||| || Sbjct 57797 TGGTGTCGTTCCAAAGACC--TTGC--TCAACGAGCTCACGGAGCAACCAAGGGTTGACG 57742 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || || ||||| || | | || ||||| ||| ||||| || ||| | || ||||| Sbjct 57741 ACCTGGAACTCACCAGCGAGTACACGGCGCGAGTAGATGTTCGAGGTGTAAGGCTCGAAG 57682 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 | || ||| || || |||||| |||||| || || ||||| || || | || ||| Sbjct 57681 CACTCGTTGAAGCCGAGAATCTGACTGGTCGAGGCAGTAGGCATGGGAGCGAGCAAGAGC 57622 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCG 22639 ||||| | | |||||||| | ||| || |||||| | | ||||||||| || ||| Sbjct 57621 GAGTTGCGAAGACCGTGCTTGGCAATCTTGGCCTTGAGGCTGGCCCAGTCCCAGAGGTCG 57562 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGC 22697 || || || ||| ||||||| ||||| || | | | || |||| || ||| | Sbjct 57561 GAGGGTGTAACAC---CCCACATGTCGTACTGGAGCTCACCCTGCGAAGCG--GGGGAAC 57507 Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCTCCAACGCG 22756 | |||| || ||||| | || | | |||||| |||||| |||| || | || Sbjct 57506 CGGCGTAGGTCTCGTAGGTGCCGTGCTCCTGGGCAAGCTCGCAGGATCGC-TCGAGAGCA 57448 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGT-- 22814 ||| || || ||||||||||| | ||| | |||||||| | | | || Sbjct 57447 GCGTGGTAGATGGTCTCGAAGATCTGAACGTTGA----GGCGGCGG-GCCTCGGGCGACT 57393 Query 22815 --ACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 | || || | ||| |||| ||| ||||| || | ||||||||| || |||||||| | Sbjct 57392 CAAAAGCGTAGCCCATGATCATGAAGGCGTCAGCAAGACCCTGAACACCGATACCGATGG 57333 Query 22872 GTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 |||||| || || ||| |||||||| | ||| || | || ||||| Sbjct 57332 GTCGGTGGCGCATGTTGGACTTGCGAGCCTCGGGGACAGGGTAGTAGTTGATGTCGATGA 57273 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 | ||||||||||| || | || | | | |||||||| | Sbjct 57272 TCTTGTTCAAGTTTTTGCAGATGGCCTTGGCGACCTCGTGCAAGCGCTTGAAGTCGTAGA 57213 Query 22992 CGCCCG----ATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCC 23047 | | | || | | || || || |||||||| || | ||||| || || Sbjct 57212 CCTTGGTGACAGGGT-CGATGAAGGTGGGGAGAGCGATCGAAGCCAAGTTGCAGACAGCG 57154 Query 23048 ACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||| || || || ||||||| | || || || || || ||| ||||| || || Sbjct 57153 ACCTCATCGGGTGCAC-TGTACTCGATGATCTCTGTGCAAAGGTTGGAGCACTTGATGGT 57095 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 || | || |||||||||| || || ||| | |||||||| || ||| | || | Sbjct 57094 ACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAAAGGATGAAGGGGTT 57035 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 || |||||| ||| ||||||| ||| || ||| | ||||||| | || || Sbjct 57034 ACCAGTCTCGGTCTGGGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGGTGCG 56975 Query 23227 CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACA-ACGCGTCAAATTCGGCACCGTAAC 23285 | | | | || || ||||||| | ||| | |||| ||||| || | ||||| | Sbjct 56974 CTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGACGC-TCAAACTCCTCGCCGTAGC 56916 Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAA 23345 |||| || || ||||| | | | || |||||||| ||| || | || | Sbjct 56915 AGTCAGCGAGACCGGGACACTCGTTAGGGCACATGAGCGACCAGTCACCGTTCTGCTCGA 56856 Query 23346 CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405 | | |||| || ||||| || | ||| || |||||||| || || ||||| || |||| Sbjct 56855 CCCTCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAGAAGAGCTCACGGGCACGTACCT 56796 Query 23406 CCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCT 23465 |||| || ||| |||||| | || | || || || || |||| ||||| |||| Sbjct 56795 CCTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCCGAGTGCCAAGGCT 56736 Query 23466 CGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCG 23525 | | ||| | |||||| || || || | ||| || || ||||| || ||||| || || | Sbjct 56735 CAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTATCGTGCAG 56676 Query 23526 TGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG--GACGCGCCGCCTACGCCCGC 23583 |||||||| | || | ||||| || |||| ||||||| ||| | ||| | || Sbjct 56675 TGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGCTGACACCATTGGTAC--CGGC 56618 Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643 | || || || |||| | |||||| | || || ||| || || || | | || Sbjct 56617 AATGTAGGAGCCAGTTCCTCGGATGTTGTGGATGTTGAGACCGATACCACCAGCGGTCTT 56558 Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703 || ||||| ||||| || || ||||||||||| || ||||| ||| || || | Sbjct 56557 GGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCGATCGAGTCATCCTTCAT 56498 Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 | ||| | ||||||||| || | || | | ||| ||| | || ||| || || || Sbjct 56497 GGTGACAAGGAAACACGACGAGAGCTGGGGGTGGGGAGTACCAGCGTTGAAGAGGGTGGG 56438 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 | ||||| || ||| | | |||||| |||||||| || ||||||||| || || Sbjct 56437 GGAAGCGTGTGTGAAGAACTTCTGCGACATGAGATTGTAGGTCTCGATGGCGCTTTCGAT 56378 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGAC 23880 |||||| ||||| ||||| | ||||| ||||| | ||||| || || | || | || Sbjct 56377 GTCCTCGCCGTGGATACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTCAGCAAC 56318 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | | ||||||||| || || || || || | | || || || || || ||| Sbjct 56317 CTT---GCCGTTAATACGGAGAAGGTAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTT 56261 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 |||| ||||| || |||| | || ||||| Sbjct 56260 GTAGTGGAAGTCGCGCTCGTAAATGATTGCCGA 56228 >seq69 Length=107628 Score = 187 bits (206), Expect = 2e-42 Identities = 386/565 (68%), Gaps = 17/565 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| ||||| || || ||||||| |||||| | ||||| Sbjct 12064 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATCGACCTT 12123 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||||||||| | ||||| || ||| | | || || Sbjct 12124 TCCAAGGATCTTCACGATTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 12183 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| ||||| ||||| |||||||||||| | ||||| || Sbjct 12184 CACGTCCTTGCCTTCTTCGCCGCTTCCGACGGTATCGTTAACGAGAATCTCGTCGAGCGA 12243 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || ||||| |||| | || || | ||||| ||||| || || | || Sbjct 12244 TTCTCCTCTGAAGTCCAAGCCGCCGAAGCTCGCTGCTTCTACGGTTTCCAGATCATGATG 12303 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || |||| || || || |||||||| || ||| | | ||| | Sbjct 12304 GAGAACATCCACTCCGAAACCTACTCCCTCCTCATCGACACCTACAT--CCGCGAAC-CC 12360 Query 57867 GAGAAACG-TAG--ACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAG 57920 ||| | || || || ||| |||| |||| || || |||| ||| |||| || Sbjct 12361 GAGCAGCGCGAGTTCCTCTTCGACGCCGTCGAGACCATCCCCG---TCGTCAAGCAAAAA 12417 Query 57921 GCAGAGTGGTCAATCAAATGGAT-AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 || || ||| | | ||||| | || | | ||||| || ||||| | || | Sbjct 12418 GCCGACTGGGCTCTTCGTTGGATCTCGGACCGTCGC-GCCACTTTTGCCGAACGTCTCGT 12476 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 ||| |||||||||||||||||||| ||||| || || || || | || || ||| | Sbjct 12477 CGCTTTCGCCGCCGTCGAAGGTATCTTCTTCTCCGGTTCGTTCGCTTCCATCTTCTGGCT 12536 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || || || |||||||| || || || ||||||| | || ||||| || || Sbjct 12537 CAAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCTCCAACGAGCTCATCTCGCGTGATGA 12596 Query 58100 GGGTCTCCATACTGATTTTGCGTGC 58124 ||| | || || || ||||| ||| Sbjct 12597 GGGCATGCACACCGACTTTGCCTGC 12621 >seq144 Length=29207 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || || || |||| ||||| |||| Sbjct 8185 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAGGTTGAGTCGTCT 8244 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||||||||||||| | || ||||| ||| Sbjct 8245 GACACTATCGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 8304 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| | || ||| || || |||||| ||| Sbjct 8305 CAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACCTTGTCCGATTACAAC 8364 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||||||||| || ||||| || || Sbjct 8365 ATCCAGAAAGAATCGACCCTCCATCTCGTTCT 8396 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| || || || |||||| |||| || || | || Sbjct 7956 CATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTC 8015 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | ||| ||||||||| || | || |||||||| Sbjct 8016 CGACACCATTGACAACGTCAAGGCCAAAATTCAGGACAAGGAGGGTATCCCTCCCGACCA 8075 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || |||||||| |||||||||||||| Sbjct 8076 GCAGCGTCTCATCTTCGCTGGTAAACAGTTGGAAGA 8111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || ||||| || || ||||| | || || || | || Sbjct 8641 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACCATCACATTGGAAGTCGAGTCCTCG 8700 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| ||| | || || |||||| Sbjct 8701 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 8760 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || || || ||||||||||| Sbjct 8761 CAGCGTCTTATCTTTGCAGGTAAGCAGTTGGAAGA 8795 >seq62 Length=118391 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| || ||||| | || || || | || Sbjct 71410 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTCGAGTCTTCG 71351 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || ||||| ||| Sbjct 71350 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 71291 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| | |||||| ||| | ||||| ||| Sbjct 71290 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCAGATTACAAC 71231 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || |||||| |||| || Sbjct 71230 ATCCAGAAGGAATCCACACTTCATTTGGTCCT 71199 >seq33 Length=194022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| || || ||||| || |||||| | || || || | Sbjct 184111 AAAGATGCAGATCTTTGTTAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTC 184170 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | ||||| | || ||||||||||||| | || || || Sbjct 184171 TTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGA 184230 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 ||||||||||| || ||||| || || ||| | ||||| | | | || | || | Sbjct 184231 TCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGA-TGGACGCACCCTTTCGGACT 184289 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || ||||| ||||| || || || Sbjct 184290 ACAACATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 184326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445694854492800