Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq81 168 8e-37 seq69 98.7 1e-15 >seq81 Length=91273 Score = 168 bits (186), Expect = 8e-37 Identities = 623/960 (65%), Gaps = 26/960 (3%) Strand=Plus/Minus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||| || | || ||||| | |||||| || |||| | || || | ||||| ||| Sbjct 56901 GGACACTCGTTAGGGCACATGAGCGACCAGTCACCGTTCTGCTCGACCCTCTTCATGAAG 56842 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGT--TTCCTG 63339 ||||| |||| ||| || || || | ||| ||| | | | || |||| | || | | Sbjct 56841 AGATCGGGAACCCAGAGGGCG-TAGA-AGAGCTCACGGGC-ACGTACCTCCTCCTTACCG 56785 Query 63340 TA-TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 | ||||| || || |||||| | | | ||| || ||||| || || | ||| ||| Sbjct 56784 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATG 56725 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | | || || || ||||| || ||||| || | ||||| || ||||| || | Sbjct 56724 GCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTATCGTGCAGTGTTGTTGAAG 56665 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 || | | ||| |||| |||||||| | |||||||||||||| || ||| ||| Sbjct 56664 ACACGGAGCATGGGAACGATACCGTTGCTGACACCATTGGTACCGGCAATGTAGGAGCCA 56605 Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 | | || || || || ||||| || || || || | || ||||| | ||| Sbjct 56604 GTTCCTCGGATGTTGTGGATGTTGAGACCGATACCACCAGCGGTCTTGGAGATCATGGCG 56545 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | ||||| ||||| || || || ||||| ||||| | | || ||| Sbjct 56544 CAGGTCTTGAGGGTGTCGTAGATACCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAA 56485 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || || | ||| | | | ||| || || || || | ||| || |||||||| || Sbjct 56484 CACGACGAGAGCTGGGGGTGGGGAGTACCAGCGTTGAAGAGGGTGGGGGAAGCGTGTGTG 56425 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 || | || | || | |||||||| ||||| || || || || ||| || Sbjct 56424 AAGAACTTCTGCGACATGAGATTGTAGGTCTCGATGGCGCTTTCGATGTCCTCGCCGTGG 56365 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || || || ||||||||||| | ||||||||| || | ||| ||| ||| ||| || Sbjct 56364 ATACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTAATA 56305 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 | | ||||||| || | || || ||||| || ||||||| ||||| || Sbjct 56304 CGGAGAAGGTAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGC 56245 Query 63879 TCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAA-T 63937 |||||||| || |||| | ||||| |||||| | || | || | | |||||| | Sbjct 56244 TCGTAAATGATTGCCGAGTCGAGCTGATCCTTGTGCTTCATGACAA----CCTGGTAAGT 56189 Query 63938 AC---TTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63994 | || || || || || || ||||| || || || | || | | | | || Sbjct 56188 GCCGTCCGAGATCATGGGGCTGTGCTTGCCATTCTTGGGGTTGATGTACTCGTAGAGGTC 56129 Query 63995 CTCCATCACTTCACTAAATAGttttt--ttGTTTCCTTGTGTAGATTTGAT-ATGGCTAT 64051 || | || || | ||||||| | ||||||||||| | | ||| | || || || Sbjct 56128 CTGAACGGTTTGGCTGA--AGTTTTTGCTGGTTTCCTTGTGCA-AGTTGCTGATAGCGAT 56072 Query 64052 TCTGGCGGCTAGAATGGCATAATCCGGAT--GTTG-TGTAGTACAAGTGGCTGCTATTTC 64108 | || || |||| ||||||||||| | |||| ||| | ||| ||| | |||| Sbjct 56071 ACGCGCAGCAAGAACAGCATAATCCGGGTGGGTTGTTGTCTTGTAAGCGGCAG---TTTC 56015 Query 64109 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64168 || |||| |||| | ||||| || || || || | || || || | ||| ||||| Sbjct 56014 AGCGGCCAAGTTGTCAAGCTCTACGGTGGTAACACCCTCGTAGATGCCGTCAATGACCTT 55955 >seq69 Length=107628 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || || || ||| ||||| ||||| || | || | ||||| || || || Sbjct 12624 CAAGCAGGCAAAGTCGGTGTGCATGCCCTCATCACGCGAGATGAGCTCGTTGGAGAAAGT 12565 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| |||||||| || |||||||| || ||||| || ||||||||||| || ||||| || Sbjct 12564 GAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAACGAACCGGAGAA 12505 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGC 33724 |||||| ||||| || || || || || Sbjct 12504 GAAGATACCTTCGACGGCGGCGAAAGC 12478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629716514275200