Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09-
20] 12,840 sequences; 23,769,677 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq144 100 3e-16
seq33 93.3 4e-14
seq69 91.5 1e-13
seq62 91.5 1e-13
>seq144
Length=29207
Score = 100 bits (110), Expect = 3e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || ||||| || ||||| |||||| || |||| ||| || ||||| || ||
Sbjct 8381 GTCGATTCTTTCTGGATGTTGTAATCGGACAAGGTGCGGCCGTCCTCAAGCTGCTTTCCG 8322
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686
|| | || ||||| |||||||||||||| |||||||| ||||| ||| | || | ||
Sbjct 8321 GCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTC-CTGAATCTTGGCCTT 8263
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | ||||| | | ||| ||||| | || | |||||||||||||| ||
Sbjct 8262 GACGTTATCGATAGTGTCAGACGACTCAACCTCGAGAGTAATGGTCTTGCCGGTCAAGGT 8203
Query 139747 TTTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 8202 CTTGACGAAGATCTGCATA 8184
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| | ||||| ||| ||| ||||||||||| || ||| | ||| | ||| ||
Sbjct 8622 AACGAGGTGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTTCGGCCGTCCTC 8563
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
|| || || |||||| |||| || ||||||||||| || || |||||||| |||||
Sbjct 8562 AAGTTGCTTTCCAGCAAAGATGAGGCGTTGCTGATCAGGTGGAATGCCTTCCTTGTCCTG 8503
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
||| || |||| | || | || || | | ||| ||||| | || | |||||
Sbjct 8502 GATCTTGGCCTTTACGTTGTCGATGGTATCAGAAGACTCGACCTCGAGAGTAATGGTCTT 8443
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| || | ||||| ||||| || ||||||
Sbjct 8442 GCCTGTAAGGGTTTTGACGAAGATCTGCATA 8412
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| | |||||||||||| |||| ||||| ||||| |||||||| || || || |||
Sbjct 8111 TCTTCCAACTGTTTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTG 8052
Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
|| ||| |||| | || | | || | ||||||| | ||||||||| | ||| |
Sbjct 8051 TC-CTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 7993
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||||||| || || || || || |||||
Sbjct 7992 GGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 7957
>seq33
Length=194022
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCT 139619
||||| || ||||| || || ||||| || || | |||| || | ||||||||||
Sbjct 184318 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCA-TCTTCGAGCT 184260
Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679
| ||||| || |||| ||||| |||||||| || || |||||||| ||||| ||| |
Sbjct 184259 GCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCT 184200
Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| || | | || | ||||| | | ||||||||||| ||| | |||||||| |
Sbjct 184199 TGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCCG 184140
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
| | || || || || || |||||
Sbjct 184139 TAAGGGTCTTAACAAAGATCTGCAT 184115
>seq69
Length=107628
Score = 91.5 bits (100), Expect = 1e-13
Identities = 125/172 (73%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 52606 GCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGT 52665
|||||||||||||||||||| ||||| || || || |||||| | || || || |||
Sbjct 12454 GCCACTTTTGCCGAACGTCTCGTCGCTTTCGCCGCCGTCGAAGGTATCTTCTTCTCCGGT 12513
Query 52666 AGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAG 52724
|| || | || || | |||| || | ||| | | |||||||| ||||| ||
Sbjct 12514 TCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCCGGTCTCACTTTCTC 12572
Query 52725 CAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG 52776
||||||| | || ||||| || || || |||||||| || ||||| || |||
Sbjct 12573 CAACGAGCTCATCTCGCGTGATGAGGGCATGCACACCGACTTTGCCTGCTTG 12624
>seq62
Length=118391
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || || |||| || || || || || ||||| |||||
Sbjct 71184 CCACCACGGAGACGGAGGACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAATCTGAA 71243
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||||||||| || || || |||| || || ||||||||||||||
Sbjct 71244 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 71303
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||| ||||| ||| || || | | || | ||||| | | ||| ||
Sbjct 71304 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACT 71363
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || | |||||||| ||||| || || || || || ||||||
Sbjct 71364 TCAAGAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATA 71411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495984381728000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |