Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq69 217 2e-51 seq81 150 3e-31 seq10 98.7 1e-15 >seq69 Length=107628 Score = 217 bits (240), Expect = 2e-51 Identities = 397/565 (70%), Gaps = 20/565 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| | |||||||| ||||| | ||||||| |||| || Sbjct 12064 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATCGACCTT 12123 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||||||||| | | | | || ||| ||||| | || || || Sbjct 12124 TCCAAGGATCTTCACGATTGGGACAACAAGCTCAACGACAAC-GAGCGTCACTTCATCTC 12182 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||| | | |||||||| |||| ||||| || ||||| ||||| ||||| || || | Sbjct 12183 TCACGTCCTTGCCTTCTTCGCCGCTTCCGACGGTATCGTTAACGAGAATCTCGTCGAG-C 12241 Query 125197 GATTCTC-TCAAGAGTTGACCATTCCAGAGGTG-TCG-TGCTTTTACGGATTCCAAATCA 125253 ||||||| || ||| ||| || | | ||| ||||| ||||| ||||| |||| Sbjct 12242 GATTCTCCTCTGAAGT---CCAAGCCGCCGAAGCTCGCTGCTTCTACGGTTTCCAGATCA 12298 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| |||| ||||| || || |||| ||||| ||||| | Sbjct 12299 TGATGGAGAACATCCACTCCGAAACCTACTCCCTCCTCATCGACACCTACATCCGCGAAC 12358 Query 125314 C---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAA 125369 | ||| || | | ||||| |||| |||| || | || ||| | | ||| Sbjct 12359 CCGAGCAGCGCGAGTTC---CTCTTCGACGCCGTCGAGACCATCCCCGTCGTCAAGCAAA 12415 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGAC-GACAAGTCTTCGTACGCCGACAGACT 125428 ||| | | |||| |||| |||||| ||| | | | | | | ||||| | || Sbjct 12416 AAGCCG-ACTGGGCTCTTCGTTGGATCTCGGACCGTCGCGCCA-CTTTTGCCGAACGTCT 12473 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 || || ||||||||||| || || |||||||| || ||| || || ||||||| || Sbjct 12474 CGTCGCTTTCGCCGCCGTCGAAGGTATCTTCTTCTCCGGTTCGTTCGCTTCCATCTTCTG 12533 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || ||||||||||| || || | |||||| | || || || || Sbjct 12534 GCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCTCCAACGAGCTCATCTCGCGTGA 12593 Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | ||| ||||||||| Sbjct 12594 TGAGGGCATGCACACCGACTTTGCC 12618 >seq81 Length=91273 Score = 150 bits (166), Expect = 3e-31 Identities = 313/462 (68%), Gaps = 8/462 (2%) Strand=Plus/Plus Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921 ||||||||||| ||||| || || || || || || || | ||| ||||| | || | Sbjct 56679 CACGATACGTTGACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGC 56738 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 |||||||| |||| || || || || | || | ||||| ||| || || |||| Sbjct 56739 CTTGGCACTCGGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGTAAGGAGGAGG 56798 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC- 97040 ||| ||| | || | || || || |||||||| || ||| | ||||||||| | ||| Sbjct 56799 TACGTGCCCGTGAGCTCTTCTACGCCCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTCG 56858 Query 97041 --AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATT 97098 | |||||| ||||| || |||||||| || || |||||||| | || | Sbjct 56859 AGCAGAACGGTG---ACTGGTCGCTCATGTGCCCTAACGAGTGTCCCGGTCTCGCTGACT 56915 Query 97099 GCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA 97158 ||| ||||| ||||||||| ||| | ||||||| ||||| || | | | Sbjct 56916 GCTACGGCGAGGAGTTTGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAAGC 56975 Query 97159 GACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 | ||| | || | |||| || ||| | |||||| | | | ||| |||||||| Sbjct 56976 GCACCGTCAAGGCTC-AGAAGCTCTGGTACGCCATCCTCGAGTCCCAGACCGAGACTGGT 57034 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 | || | ||| || |||||||| | | || ||||| |||||||| || | || Sbjct 57035 AACCCCTTCATCCTTTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGT 57094 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||||| ||||||| || ||||| || || | |||||| Sbjct 57095 ACCATCAAGTGCTCCAACCTTTGCACAGAGATCATCGAGTAC 57136 >seq10 Length=323400 Score = 98.7 bits (108), Expect = 1e-15 Identities = 399/618 (65%), Gaps = 32/618 (5%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| | || || || ||||| | ||| |||||||| || || ||||| Sbjct 256722 TTGCGGAAGAAGATCATACCAGCACGGGGACCACGGAGCGTCTTGTGGGTGGTGGTGGTG 256781 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAG-CCCGCAAT 127220 ||||||||||| ||||| |||||| ||| | | |||| |||| |||| || Sbjct 256782 ACAATGTCACAGTACTCGAAGGGGTTGTTCTGGACCTGAGCGGCAA-CAAGACCCGAGAT 256840 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATC--GGCAATCTCTCGGAA-TCG 127277 ||| ||||| |||||||| || ||| | | ||| || || ||||| || | | Sbjct 256841 GTGGGCAATGTCGGCCATGAGGTAGG--CAGACTGAGTCTTGGAGATCTCAGCGAGCTTG 256898 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTA---GGTTT 127334 | |||||| || || || || | || || | ||| | | || || || Sbjct 256899 GCG-TAGTCCCAGTCACGGGGGTA---AGCGGAACCACCGCAGATGACCATACGGGGCTT 256954 Query 127335 GAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCAC 127394 ||| || | ||| ||| || | | |||||| || | || || ||| || || Sbjct 256955 GAAGAGGTCGGCGTTCTTCTTGAGCTCGTCATAGTTGATGTAGCCGGTGGCAGGGTCAAC 257014 Query 127395 CTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT-------GCGGAAT- 127446 ||||| || | | ||| ||| || | ||| || | || |||| | Sbjct 257015 GTTGTAAGGGAACGACTGGAAGTAGATGGACGAAGCCGAGATCTTCTTCTTGGCGGTGTA 257074 Query 127447 ----CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||||| |||| ||| || ||| ||| ||| |||| |||||||| | | || || Sbjct 257075 GTAACCGTGGGTCAAGTGACCACCGGAGGGGAGACCGAGACCCATGATACGGTCCTGGGG 257134 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | || ||||| | |||||||||||| | || |||||||| || || || Sbjct 257135 CTGGAGGAGGGCAGTGAAGGTGGCAAAGTTGGCAGTGGAACCCGAGTAAGGCTGGACGTT 257194 Query 127563 CACTCCCCATTCGGACTCGT--TCAAA-TTGAACGCTCTGAGACATCGCTGCTGTGCTAG 127619 || ||||| | || | |||| ||||| || |||| |||||||| || Sbjct 257195 GACGCCCCA---GATCTTGGGGTCAAGGTTGAAAGCCTTGAGGGCACGCTGCTGGCAGAG 257251 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTC 127679 | |||| | ||||| |||||||||||||| ||||| || ||||| |||||| Sbjct 257252 AATCTCGAGCTGGTCGATGAACTCGTTACCACCGTAGTAGCGGGCACCGGGAAGACCCTC 257311 Query 127680 CGAGTACTTGTTGATGAG 127697 |||||||||||| |||| Sbjct 257312 AGAGTACTTGTTGGTGAG 257329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740940259998400