Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09-
20] 12,840 sequences; 23,769,677 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq144 95.1 1e-14
seq62 86.0 5e-12
seq33 86.0 5e-12
>seq144
Length=29207
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||||||||||||||||||||||| || | | | ||| ||||||| || |||
Sbjct 8615 TGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTTCGGCCGTCCTCAAGTTGC 8556
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || | | || | || |||||||| || | | |||||||||| || ||
Sbjct 8555 TTTCCAGCAAAGATGAGGCGTTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTG 8496
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||| | | | || |||||||| | |||||| ||||| || ||||| || || |
Sbjct 8495 GCCTTTACGTTGTCG--ATGGTATCAGAAGACTCGACCTCGAGAGTAATGGTCTTGCCTG 8438
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
| || ||||| || || ||||||||
Sbjct 8437 TAAGGGTTTTGACGAAGATCTGCAT 8413
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||||||||| | | ||| | ||||| ||||||||||| || |||||||| || |
Sbjct 8868 ACCTCCGCGCAAACGAAGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCG- 8810
Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|| || || | || |||| ||||||||| | | || | ||||||||| || |
Sbjct 8809 AAAGGGTGCGACCATCTTCCAACTGCTTACCTGCAAAGATAAGACGCTGCTGGTCAGGGG 8750
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | ||||||||| ||| || ||||| | | || || || | |||||
Sbjct 8749 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAGGACTCGA 8690
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | ||| ||||| || || ||||| || || ||||| || |||||
Sbjct 8689 CTTCCAATGTGATGGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 8641
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
|| || || ||||||||||| | ||| || ||||||| |||||||| ||| || ||
Sbjct 8375 TCTTTCTGGATGTTGTAATCGGACAAGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAA 8316
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|| | |||||||||||| || | | |||||||||| ||| || |||||
Sbjct 8315 ATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTA 8256
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
| || || || | ||||| ||||| || ||||| || ||||| | || || ||
Sbjct 8255 TCGATAGTGTCAGACGACTCAACCTCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACG 8196
Query 48716 AAAATCTGCAT 48726
|| ||||||||
Sbjct 8195 AAGATCTGCAT 8185
>seq62
Length=118391
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576
|| |||||||||||| ||||| || ||||||||||| | | | || || |||| ||
Sbjct 71202 ACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAATCTGAAAGAGTG-CGGCCGTCTTC 71260
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| ||| || | || | ||||||||||| || | | ||||||||||
Sbjct 71261 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTG 71320
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||||| | | || ||||| || | |||||| || | || |||||
Sbjct 71321 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCGACTTCAAGAGTGATGGTC 71378
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || | ||| || ||||| ||||||||
Sbjct 71379 TTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 71410
>seq33
Length=194022
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/207 (71%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
||||| || |||||| || |||||||| || | || || || | || || |||||
Sbjct 184317 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGTCCATCTTCGAGCTG 184259
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||||||| || | || | |||||||||||| || | | |||||||||| || ||
Sbjct 184258 CTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 184199
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||||| | | || ||||| || | ||||||| ||| | || ||||| || ||
Sbjct 184198 GGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCC 184141
Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727
|| || || || ||||| |||||||||
Sbjct 184140 GTAAGGGTCTTAACAAAGATCTGCATC 184114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421185279452840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |