Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq144 95.1 1e-14 seq62 86.0 5e-12 seq33 86.0 5e-12 >seq144 Length=29207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||||||||||||||||||||||| || | | | ||| ||||||| || ||| Sbjct 8615 TGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTTCGGCCGTCCTCAAGTTGC 8556 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | || |||||||| || | | |||||||||| || || Sbjct 8555 TTTCCAGCAAAGATGAGGCGTTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTG 8496 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || |||||||| | |||||| ||||| || ||||| || || | Sbjct 8495 GCCTTTACGTTGTCG--ATGGTATCAGAAGACTCGACCTCGAGAGTAATGGTCTTGCCTG 8438 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || || |||||||| Sbjct 8437 TAAGGGTTTTGACGAAGATCTGCAT 8413 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||||||||| | | ||| | ||||| ||||||||||| || |||||||| || | Sbjct 8868 ACCTCCGCGCAAACGAAGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCG- 8810 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | || |||| ||||||||| | | || | ||||||||| || | Sbjct 8809 AAAGGGTGCGACCATCTTCCAACTGCTTACCTGCAAAGATAAGACGCTGCTGGTCAGGGG 8750 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| ||| || ||||| | | || || || | ||||| Sbjct 8749 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAGGACTCGA 8690 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| ||||| || || ||||| || || ||||| || ||||| Sbjct 8689 CTTCCAATGTGATGGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 8641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || || || ||||||||||| | ||| || ||||||| |||||||| ||| || || Sbjct 8375 TCTTTCTGGATGTTGTAATCGGACAAGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAA 8316 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | |||||||||| ||| || ||||| Sbjct 8315 ATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTA 8256 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || || | ||||| ||||| || ||||| || ||||| | || || || Sbjct 8255 TCGATAGTGTCAGACGACTCAACCTCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACG 8196 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 8195 AAGATCTGCAT 8185 >seq62 Length=118391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || |||||||||||| ||||| || ||||||||||| | | | || || |||| || Sbjct 71202 ACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAATCTGAAAGAGTG-CGGCCGTCTTC 71260 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | ||||||||||| || | | |||||||||| Sbjct 71261 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTG 71320 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| || | |||||| || | || ||||| Sbjct 71321 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCGACTTCAAGAGTGATGGTC 71378 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | ||| || ||||| |||||||| Sbjct 71379 TTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 71410 >seq33 Length=194022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || | || || || | || || ||||| Sbjct 184317 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGTCCATCTTCGAGCTG 184259 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || | |||||||||||| || | | |||||||||| || || Sbjct 184258 CTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 184199 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | ||||||| ||| | || ||||| || || Sbjct 184198 GGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCC 184141 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || || ||||| ||||||||| Sbjct 184140 GTAAGGGTCTTAACAAAGATCTGCATC 184114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421185279452840