Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09-
20] 12,840 sequences; 23,769,677 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq243 140 2e-28
seq11 129 4e-25
seq144 105 4e-18
seq751 104 2e-17
seq62 91.5 1e-13
>seq243
Length=1468
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1440 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1381
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1380 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1346
>seq11
Length=300877
Score = 129 bits (142), Expect = 4e-25
Identities = 211/304 (69%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246
|||| | ||| ||| ||||| ||| ||||||| | | ||||| |||||||||
Sbjct 129326 ATGTCGACGACAAGTTTTACCGATACCGCATGCCGCTCCTTCAGACCAAGATCGAGGGTA 129267
Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306
|||| |||||||| || ||||||||| ||||||| | || | ||| ||||| | |
Sbjct 129266 AGGGTAACGGTATCAAGACCGTCATTCCCAACATGTCCGACATTGCTCGCTCGCTCAGCC 129207
Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366
| ||| | || |||||||| || | ||||| || || ||||| |||||||| ||| |
Sbjct 129206 GTCCTCCTACTTACCCGACCAAGTTCTTCGGATGTGAGCTTGGTGCTCAGACCTCGTTCG 129147
Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426
| | || ||||| || | |||||| ||||| | ||| || | | | || | ||
Sbjct 129146 ACGAGAAGAACGACCGATACATCGTCAACGGTGCTCATGACGCCGACCGTCTCCGAGAGC 129087
Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
| || |||| ||| || || || || || || | || ||| | ||||| |||||||
Sbjct 129086 TTCTCGACGTCTTCATCGATAAATTCGTCCTCTGCGGTGACTGCAAGAACCCCGAGACCG 129027
Query 6487 AGCT 6490
| ||
Sbjct 129026 ATCT 129023
>seq144
Length=29207
Score = 105 bits (116), Expect = 4e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
||||| ||||||||||||||||| ||||| || || | || |||| || | |||
Sbjct 8615 TGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTTCGGCCGTCCTCAAGTTGC 8556
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
||||| ||||| || |||||||| ||||| | || | |||||| |||||| || ||
Sbjct 8555 TTTCCAGCAAAGATGAGGCGTTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTG 8496
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||| || || | || ||||| | || || || | ||||| || || || ||
Sbjct 8495 GCCTTTACGTTGTCGATGGTATCAGAAGACTCGACCTCGAGAGTAATGGTCTTGCCTGTA 8436
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| |||||| ||||| ||||||||
Sbjct 8435 AGGGTTTTGACGAAGATCTGCAT 8413
>seq751
Length=456
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 53 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 112
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 113 CCCAATATTTAGCCTTA 129
>seq62
Length=118391
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | ||| | ||||||||||| ||| ||||| || || |||||||| ||
Sbjct 71183 ACCACCACGGAGACGGAGGACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAATCTGA 71242
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| | || |||| || | || || ||||| || || ||||| || ||||||| ||
Sbjct 71243 AAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGG 71302
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| |||||| |||||| || || ||| || || | || || || | || ||
Sbjct 71303 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 71362
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| | || || || || || ||||| || || || || ||||||||
Sbjct 71363 TTCAAGAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 71410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334894784950040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |