Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq243 140 2e-28 seq11 129 4e-25 seq144 105 4e-18 seq751 104 2e-17 seq62 91.5 1e-13 >seq243 Length=1468 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1440 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1381 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1380 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1346 >seq11 Length=300877 Score = 129 bits (142), Expect = 4e-25 Identities = 211/304 (69%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| ||| ||||| ||| ||||||| | | ||||| ||||||||| Sbjct 129326 ATGTCGACGACAAGTTTTACCGATACCGCATGCCGCTCCTTCAGACCAAGATCGAGGGTA 129267 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| |||||||| || ||||||||| ||||||| | || | ||| ||||| | | Sbjct 129266 AGGGTAACGGTATCAAGACCGTCATTCCCAACATGTCCGACATTGCTCGCTCGCTCAGCC 129207 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | ||| | || |||||||| || | ||||| || || ||||| |||||||| ||| | Sbjct 129206 GTCCTCCTACTTACCCGACCAAGTTCTTCGGATGTGAGCTTGGTGCTCAGACCTCGTTCG 129147 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 | | || ||||| || | |||||| ||||| | ||| || | | | || | || Sbjct 129146 ACGAGAAGAACGACCGATACATCGTCAACGGTGCTCATGACGCCGACCGTCTCCGAGAGC 129087 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | || |||| ||| || || || || || || | || ||| | ||||| ||||||| Sbjct 129086 TTCTCGACGTCTTCATCGATAAATTCGTCCTCTGCGGTGACTGCAAGAACCCCGAGACCG 129027 Query 6487 AGCT 6490 | || Sbjct 129026 ATCT 129023 >seq144 Length=29207 Score = 105 bits (116), Expect = 4e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||||||||||||||||| ||||| || || | || |||| || | ||| Sbjct 8615 TGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTTCGGCCGTCCTCAAGTTGC 8556 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| || |||||||| ||||| | || | |||||| |||||| || || Sbjct 8555 TTTCCAGCAAAGATGAGGCGTTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTG 8496 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || || | || ||||| | || || || | ||||| || || || || Sbjct 8495 GCCTTTACGTTGTCGATGGTATCAGAAGACTCGACCTCGAGAGTAATGGTCTTGCCTGTA 8436 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | |||||| ||||| |||||||| Sbjct 8435 AGGGTTTTGACGAAGATCTGCAT 8413 >seq751 Length=456 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 53 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 112 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 113 CCCAATATTTAGCCTTA 129 >seq62 Length=118391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||||||||||| ||| ||||| || || |||||||| || Sbjct 71183 ACCACCACGGAGACGGAGGACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAATCTGA 71242 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || |||| || | || || ||||| || || ||||| || ||||||| || Sbjct 71243 AAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGG 71302 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || |||||| |||||| || || ||| || || | || || || | || || Sbjct 71303 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 71362 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | || || || || || ||||| || || || || |||||||| Sbjct 71363 TTCAAGAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 71410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334894784950040