Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09-
20] 12,840 sequences; 23,769,677 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq144 138 9e-28
seq62 125 6e-24
seq24 100 2e-16
>seq144
Length=29207
Score = 138 bits (152), Expect = 9e-28
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | |||||||| || |||| || || ||||| | ||
Sbjct 7957 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 8016
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| |||||||| |||||||||||||| || ||||| ||
Sbjct 8017 GACACCATTGACAACGTCAAGGCCAAAATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 8076
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || |||||||| || ||| ||| ||| |||| || ||||||
Sbjct 8077 CAGCGTCTCATCTTCGCTGGTAAACAGTTGGAAGATGGCCGAACCCTCTCGGACTACAAC 8136
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || || || |||||| | || || ||
Sbjct 8137 ATCCAGAAGGAGTCCACCTTGCACTTGGT 8165
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || ||||| || || | ||||| || || || | |
Sbjct 8185 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAGGTTGAGTCGTCT 8244
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | |||| || ||||| |||||||| || ||||| ||||||||
Sbjct 8245 GACACTATCGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 8304
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || ||||| || ||| | ||||| ||||||| | ||||||||||||
Sbjct 8305 CAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACCTTGTCCGATTACAAC 8364
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || |||||||| ||| | ||| | ||| | || | || || |||
Sbjct 8365 ATCCAGAAAGAATCGACCCTCCATCTCGTTCTCCGTCTTCGTGGTGGT 8412
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || || || |||| | ||||| || || |
Sbjct 8641 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACCATCACATTGGAAGTCGAGTCCTCG 8700
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || ||||| ||||||||||| || || || || ||
Sbjct 8701 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 8760
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| ||||| || || ||||| || ||| |||||| | || || ||||||
Sbjct 8761 CAGCGTCTTATCTTTGCAGGTAAGCAGTTGGAAGATGGTCGCACCCTTTCGGACTACAAC 8820
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||| | || | || | || ||||||||||||
Sbjct 8821 ATCCAGAAGGAGAGCACTCTTCACCTTGTGCTTCGTTTGCGCGGAGGT 8868
Score = 102 bits (112), Expect = 7e-17
Identities = 160/228 (70%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | || || || ||| |||| || || || || | |
Sbjct 8869 ATGCAGATCTTTGTCAAGACGCTCACTGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 8928
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC-CGATCA 22337
|| ||| | ||| | |||| || |||||||||||||||| |||||| || || ||
Sbjct 8929 GACACCATTGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGATATTCCCCCTGGACCA 8988
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| |||||||| ||||| || || ||||| || || |||||| |||| || |||||
Sbjct 8989 GCAGCGTCTTATCTTTGCAGGTAAGCAGTTGGAAGACGGTCGCACCCTCTCGGACTACAA 9048
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||| || || || ||| | || | || ||||| | || |||||
Sbjct 9049 CATCCAGAAGGAGAGCACTTTGCACCTTGTCTTGCGTCTCCGTGGAGG 9096
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || ||||| | || || || || | ||||| || || || | |
Sbjct 8413 ATGCAGATCTTCGTCAAAACCCTTACAGGCAAGACCATTACTCTCGAGGTCGAGTCTTCT 8472
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | | || || || || |||||||| || |||||||| |||||
Sbjct 8473 GATACCATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCTGATCAG 8532
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || ||||| || || || | ||||| ||| || ||||||| ||||||
Sbjct 8533 CAACGCCTCATCTTTGCTGGAAAGCAACTTGAGGACGGCCGAACACTCTCCGACTACAAC 8592
Query 22399 ATTCAAAAAGA 22409
|||||||| ||
Sbjct 8593 ATTCAAAAGGA 8603
>seq62
Length=118391
Score = 125 bits (138), Expect = 6e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | ||||| || || |||| || || || || ||
Sbjct 71640 AGATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCT 71581
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| || ||| | ||| | |||| || ||||| || ||||||||||| ||||| || |
Sbjct 71580 CGGACACCATTGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCACCTGACC 71521
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || |||||||| ||||| || || ||| | |||||| ||||||| |||| || ||||
Sbjct 71520 AGCAGCGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACA 71461
Query 22397 ACATTCAAAAAGAATCCAC 22415
|||| || || || |||||
Sbjct 71460 ACATCCAGAAGGAGTCCAC 71442
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||||| || || || || ||||||||||||| || | |
Sbjct 71410 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTCGAGTCTTCG 71351
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || || |||||||| || || || ||||||||
Sbjct 71350 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 71291
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || |||||||| ||| | || || |||||| | || |||||||||
Sbjct 71290 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCAGATTACAAC 71231
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || || |||||||| | ||||| ||
Sbjct 71230 ATCCAGAAGGAATCCACACTTCATTTGGT 71202
>seq24
Length=214592
Score = 100 bits (110), Expect = 2e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301
||| ||||| || |||| ||||| ||||| | |||| ||| | ||| | | ||
Sbjct 73571 AACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTTAAGGC 73512
Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361
|| || || |||||||||||||| || ||||| || || ||||| || || ||||| ||
Sbjct 73511 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAA 73452
Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | ||||| ||||||| | || || |||||||| || || || || |||
Sbjct 73451 GCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACC 73397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419662317814600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |