Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq144 134 3e-26 seq62 134 3e-26 seq82 102 2e-16 >seq144 Length=29207 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || ||||| | | Sbjct 8183 CCACCACGGAGACGGAGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 8124 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| || ||||| || |||||||| |||||||| || ||| Sbjct 8123 AGGGTTCGGCCATCTTCCAACTGTTTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 8064 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| ||||| || || ||||| || || | ||| || || || Sbjct 8063 ATACCCTCCTTGTCCTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 8004 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 8003 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 7957 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | || |||||| ||||| || || |||| Sbjct 8411 CCACCACGAAGACGGAGAACGAGATGGAGGGTCGATTCTTTCTGGATGTTGTAATCGGAC 8352 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || | || ||||| ||||| || |||||||| ||| || Sbjct 8351 AAGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 8292 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || || || ||||| || |||| || ||| || || Sbjct 8291 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTATCGATAGTGTCAGACGACTCAACC 8232 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||||| ||||||||||| |||||||| Sbjct 8231 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 8185 Score = 114 bits (126), Expect = 3e-20 Identities = 145/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || ||||| | ||| ||||| |||||||| || || || ||| Sbjct 9066 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCTTCCAACTGCTTACCT 9007 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTC-CTTCTTTATCCTGGATTTTCGCTTT 288395 || ||||| |||||||| || |||| | | || || || || || || || || Sbjct 9006 GCAAAGATAAGACGCTGCTGGTCCAGGGGGAATATCCTCCTTGTCTTGAATCTTGGCCTT 8947 Query 288396 CACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 ||||| || || | || ||| || || ||||| ||||||||||| || || || || Sbjct 8946 GACGTTGTCAATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTTCCAGTGAGCGT 8887 Query 288456 CTTGACGAATATCTGCAT 288473 |||||| || |||||||| Sbjct 8886 CTTGACAAAGATCTGCAT 8869 >seq62 Length=118391 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| |||| ||| || || ||||| || ||||| | | Sbjct 71412 CCACCGCGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 71471 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| |||||||| || | |||| Sbjct 71472 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGTGGG 71531 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || || || ||||| || || | || || || || Sbjct 71532 ATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACC 71591 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 71592 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 71638 >seq82 Length=90256 Score = 102 bits (112), Expect = 2e-16 Identities = 300/449 (67%), Gaps = 20/449 (4%) Strand=Plus/Plus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 || |||||| | |||| ||| |||||||| |||||| |||||||| || ||| Sbjct 61737 ATGTATCGTCCCGACGCGGCATCTTTACCACCGAGCAATCGAGAACCGAATTGACCCCTT 61796 Query 325382 GGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT 325440 || | ||| || |||| ||| ||||| |||||| | | |||||| || || ||||| Sbjct 61797 GG-ATCAAGCAAATTGACGTTGTTGCTACCGACAAAGTTCTGTGCGAGACCGACAATGGT 61855 Query 325441 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAA 325500 | | || | || || || ||||| |||||| | || | |||| |||| || Sbjct 61856 CATGTTGAGCGCAGCGTCACCGTGGTGGTAGGCGGTTTGACCCATAACGCTACCGACCAA 61915 Query 325501 CTGTGCAACCTTCACGTCGG--TCG-TCAAATTGCGCTTGAAAGCTGAA-TATATCACTT 325556 ||| |||||||| || | | | || ||||||| ||| ||| | || || | Sbjct 61916 CTGGTTGACCTTCACTTCAGAGTAGCTC---TTGCGCTCGAACA-TGACGTGAATGACCT 61971 Query 325557 TCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACC 325616 | || ||| ||| |||| |||||| ||||| || |||||| || | ||| | Sbjct 61972 TTCGCTGACCAGGCTTGAGACCATCGACGACGGAAGGAATGGAACGAACGTTGTCGGCCA 62031 Query 325617 GCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGT 325676 |||||| | || || || |||| ||||||||||| | ||||| || | | |||| Sbjct 62032 TCGAGAAGAGGATGAGCTCTTTGTTGATGAAGTCGGCATAGGGAATCTTGTCGATGTTGT 62091 Query 325677 GGTCAAGTTGATTTCCTGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--TC 325733 ||||||| | | ||||| | | || || | ||||||||| || || || || || Sbjct 62092 GGTCAAGGTAGGTGCCTGGACGGAACTGGCG-AAGCCACTCCTTACGGTCATCAGCCTTC 62150 Query 325734 GTGACTTGTTGA----AAGAACGGTCAAT 325758 | |||||||| |||| || ||||| Sbjct 62151 TT--CTTGTTGAAGGCAAGATCGATCAAT 62177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179460332105520