Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq144 104 2e-17 seq81 82.4 7e-11 seq62 82.4 7e-11 >seq144 Length=29207 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||| ||||| || || || || |||| ||| ||||| ||| Sbjct 8159 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCATCTTCCAACTGT 8100 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || |||||||| || || || || || || || |||||||| Sbjct 8099 TTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATTTTG 8040 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||||||||||||| || ||||| || | || || ||||| Sbjct 8039 GCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGT 7981 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| || ||||| Sbjct 7980 CAGAGTCTTGACAAAGATCTGCAT 7957 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || ||||| |||||||| || || || ||| Sbjct 8642 ATACCACCACGGAGTCGGAGAACGAGGTGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCG 8583 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | ||| ||||| || | || | |||||||| || || Sbjct 8582 GAGAGTGTTCGGCCGTCCTCAAGTTGCTTTCCAGCAAAGATGAGGCGTTGCTGATCAGGT 8523 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || || || || || | || | || | ||| || |||||||| Sbjct 8522 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTGTCGATGGTATCAGAAGACTC 8464 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||||| || ||||| || || ||||| || || || ||||| Sbjct 8463 GACCTCGAGAGTAATGGTCTTGCCTGTAAGGGTTTTGACGAAGATCTGCAT 8413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| || ||||| || |||||| | ||| || || Sbjct 8393 ACGAGATGGAGGGTCGATTCTTTCTGGATGTTGTAATCGGACAAGGTGCGGCCGTCCTCA 8334 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| ||| | || | || ||||| || || ||||||||||| || || ||| Sbjct 8333 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGA 8274 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||||| || ||||| || |||||||||| || || Sbjct 8273 ATCTTGGCCTTGA-CGTTATCGATAGTGTCAGACGACTCAACCTCGAGAGTAATGGTCTT 8215 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | || || || || || ||||| Sbjct 8214 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 8185 >seq81 Length=91273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| || || ||| || || ||||||||||| |||||| | || | ||||| Sbjct 56315 AAGGTTGCTGAGCGTCCCCAGCACATGCTCATGCGTGTCGCTGTTGGTATCCACGGCGAG 56374 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||||| ||| | ||| || ||| || | ||||| || || || ||||| ||||| Sbjct 56375 GACATCGAAAGCGCCATCGAGACCTACAATCTCATGTCGCAGAAGTTCTTCACACACGCT 56434 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||||| | ||| ||| || || || ||| | || |||||||| | || Sbjct 56435 TCCCCCACCCTCTTCAACGCTGGTACTCCCCACCCCCAGCTCTCGTCGTGTTTCCTTGTC 56494 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAAC 123115 ||| || || ||| ||| ||||||||| || || Sbjct 56495 ACCATGAAGGATGACTCGATCGACGGTATCTACGACAC 56532 >seq62 Length=118391 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || | ||| || || |||||||| ||||| || ||||| || Sbjct 71184 CCACCACGGAGACGGAGGACCAAATGAAGTGTGGATTCCTTCTGGATGTTGTAATC--TG 71241 Query 45174 ACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | | | || || | || || || ||| | || | || ||||| || || | Sbjct 71242 AAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAG 71301 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | |||||||| || || || || || |||| || | || | |||||| ||||||||| Sbjct 71302 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCG 71360 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || ||||| || | ||| || ||||| || ||||| Sbjct 71361 ACTTCAAGAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 71410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451930653486400