Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq69 297 2e-75 seq144 123 2e-23 seq33 114 1e-20 seq24 111 2e-19 seq62 109 5e-19 >seq69 Length=107628 Score = 297 bits (328), Expect = 2e-75 Identities = 407/566 (72%), Gaps = 7/566 (1%) Strand=Plus/Minus Query 132879 ATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938 |||| ||| | |||||| ||||||||| |||| |||||| || | || ||||| || Sbjct 12636 ATGCGAGAAGAGCAAGCAGGCAAAGTCGGTGTGCATGCCCTCATCACGCGAGATGAGCTC 12577 Query 132939 GTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAA 132998 |||| |||||| | ||||||||||| || || || |||||||| || |||| ||||| Sbjct 12576 GTTGGAGAAAGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAA 12517 Query 132999 ACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT 133058 || || ||||||| || |||||||| |||||||| || || || ||| | || || Sbjct 12516 CGAACCGGAGAAGAAGATACCTTCGACGGCGGCGAAAGCGACGAGACGTTCGGCAAAAGT 12457 Query 133059 GGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCAT 133118 ||| | | |||||| || || ||||| ||||| |||| |||||| || || Sbjct 12456 GGCGCGACGGTCCGAGATCCAACGAAGAGCCCAGTCGGCTTTTTGCTTGACGACGGGGAT 12397 Query 133119 CGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCG 133176 || |||| ||||| || | | | | | || | || ||| | |||||||||| Sbjct 12396 GGTCTCGACGGCGTCGAAGAG--GAACTCGCGCTGCTCGGGTTCGCGGATGTAGGTGTCG 12339 Query 133177 ATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAG 133236 |||||| || || |||| ||||| | ||||||||| ||| || || ||||| ||| Sbjct 12338 ATGAGGAGGGAGTAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAG 12279 Query 133237 CACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACG 133296 || || || ||| | | || ||||| | ||| |||||||| ||||| ||||| ||| Sbjct 12278 CAGCGAGCTTCGGCGGCTTGGACTTCAGAGGAGAATCGCTCGACGAGATTCTCGTTAACG 12219 Query 133297 ATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCG 133356 || |||||| |||||||| ||||| || ||||| |||||| || |||||||||||| Sbjct 12218 ATACCGTCGGAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCG 12159 Query 133357 TT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAA 133413 || | | ||||| ||| | |||||||| ||||| | ||| ||| ||||||| Sbjct 12158 TTGAGCTTGTTGTCCCAATCGTGAAGATCCTTGGAAAGGTCGATCTCTTCGGCGGTCCAG 12099 Query 133414 AACGACGCCTCGGCTTTTTTGTACAT 133439 || || || ||||| || |||||||| Sbjct 12098 AAGGAGGCTTCGGCCTTCTTGTACAT 12073 >seq144 Length=29207 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| |||| || ||| | || Sbjct 7957 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 8016 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||| | ||||| ||||| || || ||||||| Sbjct 8017 GACACCATTGACAACG-TCAAGGCCAAAATTCAGGACAAGGAGGGTATCCCTCCCGACCA 8075 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || |||||| |||| || | || |||||| |||||||| Sbjct 8076 GCAGCGTCTCATCTTCGCTGGTAAACAGTTGGAAGATGGCCGAACCCTCTCGGACTACAA 8135 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || |||| ||||| || ||| Sbjct 8136 CATCCAGAAGGAGTCCACCTTGCACTTGGTCCTCCGT 8172 Score = 105 bits (116), Expect = 7e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || |||||||| | || |||||| || | Sbjct 8641 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACCATCACATTGGAAGTCGAGTCCTCG 8700 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | || || | ||||| ||||| || ||| | ||||| Sbjct 8701 GACACGATTGACAATG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 8759 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||| |||| || | |||||||| |||||||| Sbjct 8760 GCAGCGTCTTATCTTTGCAGGTAAGCAGTTGGAAGATGGTCGCACCCTTTCGGACTACAA 8819 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||| || || || | ||||| |||||| | || || Sbjct 8820 CATCCAGAAGGAGAGC-ACTCTTCACCTTGTGCTTCGTTTGCGCGGAGG 8867 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||| || |||| || ||| | | Sbjct 8185 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAGGTTGAGTCGTCT 8244 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| || || ||||| |||| || Sbjct 8245 GACACTATCGATAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCA 8303 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| || || ||||| || |||| |||||| | ||| ||||| Sbjct 8304 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACCTTGTCCGATTACAA 8363 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| |||| || ||| | || || ||| Sbjct 8364 CATCCAGAAAGAATCGACCCTCCATCTCGTTCTCCGT 8400 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/193 (73%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| || || || |||||| |||| || ||| | | Sbjct 8869 ATGCAGATCTTTGTCAAGACGCTCACTGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 8928 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || || | ||||| |||| |||||| | | ||| Sbjct 8929 GACACCATTGACAACG-TCAAGGCCAAGATTCAAGACAAGGAGGATATTCCCCCTGGACC 8987 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || || || ||| |||| |||| ||||||||| ||||||| Sbjct 8988 AGCAGCGTCTTATCTTTGCAGGTAAGCAGTTGGAAGACGGTCGCACCCTCTCGGACTACA 9047 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 9048 ACATCCAGAAGGA 9060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| ||||| || |||| |||||| | | Sbjct 8413 ATGCAGATCTTCGTCAAAACCCTTACAGGCAAGACCATTACTCTCGAGGTCGAGTCTTCT 8472 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 8473 GATACCATCGACAACG-TAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCTGATCA 8531 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || || || || || || |||| || || ||| ||||||||| Sbjct 8532 GCAACGCCTCATCTTTGCTGGAAAGCAACTTGAGGACGGCCGAACACTCTCCGACTACAA 8591 Query 38423 CATCCAAAAGGA-AGCGACGCTGCA 38446 ||| |||||||| ||| ||||| || Sbjct 8592 CATTCAAAAGGAGAGC-ACGCTTCA 8615 >seq33 Length=194022 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || || |||||||| ||||||||| | || || ||| | Sbjct 184111 AAAGATGCAGATCTTTGTTAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTC 184170 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | | | |||| | || | || |||| ||||| || || |||||| | | Sbjct 184171 TTCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTG 184229 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||||| ||||| | ||| || || ||||| || || | |||||||| |||| Sbjct 184230 ATCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGACGCACCCTTTCGGACT 184289 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| ||||| |||| || || | ||||| || Sbjct 184290 ACAACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTCCG 184329 >seq24 Length=214592 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || ||||||||| | || || ||| | |||||| | | | |||| |||| | Sbjct 73570 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACG-TTAAGGC 73512 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || ||| ||||||| ||||| ||||| | ||| || || Sbjct 73511 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAA 73452 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| |||||||| |||||||||||||| ||||| |||| || || Sbjct 73451 GCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCA 73392 Query 38447 TTTGGTGCTGCGT 38459 | || || ||| Sbjct 73391 CCTCGTCCTCCGT 73379 >seq62 Length=118391 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || |||||| | | Sbjct 71410 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTCGAGTCTTCG 71351 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || |||| || Sbjct 71350 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCA 71292 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| ||||| || || ||||| Sbjct 71291 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCAGATTACAA 71232 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || |||||||| || ||| Sbjct 71231 CATCCAGAAGGAATCCACACTTCATTTGGTCCTCCGT 71195 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| |||| || ||| || | Sbjct 71638 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 71579 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | || || ||||| || || | ||||| Sbjct 71578 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCACCTGACCA 71520 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | ||||||||| |||||||| Sbjct 71519 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAA 71460 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 71459 CATCCAGAAGGA 71448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500092522265600