Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq144 105 2e-17 seq33 93.3 1e-13 >seq144 Length=29207 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||||||||| || ||||| |||||||| || || ||| Sbjct 8644 CAAATCTTTGTCAAGACACTCACAGGAAAGACCATCACATTGGAAGTCGAGTCCTCGGAC 8703 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || || ||| || Sbjct 8704 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 8763 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || ||||||||||||||||| | || | | || |||||| || Sbjct 8764 CGTCTTATCTTTGCAGGTAAGCAGTTGGAAGATGGTCGCACCCTTTCGGACTACAACATC 8823 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| |||||||||||||| Sbjct 8824 CAGAAGGAGAGCACTCTTCACCTTGT 8849 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| |||||||| ||||| |||||||| | || || || || ||| Sbjct 8872 CAGATCTTTGTCAAGACGCTCACTGGAAAGACGATCACCCTCGAGGTTGAGTCGTCGGAC 8931 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC-GGACGCTCA 206291 || | || || ||| ||||||||||| || || | ||| || |||| || Sbjct 8932 ACCATTGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGATATTCCCCCTGGACCAGCA 8991 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| || || |||||||||||||| || | || | | || |||||| | Sbjct 8992 GCGTCTTATCTTTGCAGGTAAGCAGTTGGAAGACGGTCGCACCCTCTCGGACTACAACAT 9051 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||| ||| | |||||||| ||| | || || Sbjct 9052 CCAGAAGGAGAGCACTTTGCACCTTGTCTTGCGTCTCCG 9090 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || || ||| | || || || |||||| Sbjct 8188 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAGGTTGAGTCGTCTGAC 8247 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| ||| || || || Sbjct 8248 ACTATCGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCCGATCAGCAG 8307 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||||||||||||| | || || || | || ||| ||||||||||| || Sbjct 8308 CGTCTCATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACCTTGTCCGATTACAACATC 8367 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || || || || ||| | | ||||| Sbjct 8368 CAGAAAGAATCGACCCTCCATCTCGTTCTCCGTCTTCG 8405 >seq33 Length=194022 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || ||||| ||| ||| Sbjct 184118 CAGATCTTTGTTAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGAC 184177 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || || || Sbjct 184178 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGCAG 184237 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | ||||||||| | || | | || |||||| || Sbjct 184238 CGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGACGCACCCTTTCGGACTACAACATC 184297 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || |||||||| || Sbjct 184298 CAGAAGGAGTCGACCCTTCACCTCGT 184323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181626375705640