Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudozyma_20tsukubaensis_20[genbank_20GCA_5F001736125.1_202016-09- 20] 12,840 sequences; 23,769,677 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq81 215 6e-51 seq69 132 6e-26 seq82 127 3e-24 >seq81 Length=91273 Score = 215 bits (238), Expect = 6e-51 Identities = 569/861 (66%), Gaps = 11/861 (1%) Strand=Plus/Minus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || || ||||| || |||| || || |||| | |||||| || ||||||| || Sbjct 57186 GGGAGAGCGATCGAAGCCAAGTTGCAGACAGCGACCTCATCGGGTGCACTGTACTCGATG 57127 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||| | ||| || | ||| ||||| || | |||||| || || ||| | Sbjct 57126 ATCTCTGTGCAAAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 57067 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || ||||||||||| ||| | || | || ||||| || ||||||| ||| || Sbjct 57066 TTGGCAGCGTCCTTGTAAAGGATGAAGGGGTTACCAGTCTCGGTCTGGGACTCGAGGATG 57007 Query 118884 GCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 || | ||||| | || | ||| || ||| |||| || ||||| ||||||| Sbjct 57006 GCGTACCAGAGCTTCTG-AGCCTTGACGGTGCGCTTGGAGCGACCCTCGGCCTCGTAGCG 56948 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 |||||| |||||||| || || | || | ||| || || || | || Sbjct 56947 CTCGTAGAGACGCTCAAACTCCTCGCCGTAGCAGTCAGCGAGACCGGGACACTCGTTAGG 56888 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 ||| | ||| ||||| | ||| || ||| |||| |||||||||||| || || | ||| Sbjct 56887 GCACATGAGCGACCAGTCACCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGAACCCA 56828 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 ||| || ||||||| || || || | || || | || || || || | || Sbjct 56827 GAGGGCGTAGAAGAGCTCACGGGCACGTACCTCCTCCTTACCGTGGTTCTTGCGGAGGTC 56768 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 | || || | || ||||| |||||| || || | ||| | || | | || ||| Sbjct 56767 AAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACG 56708 Query 119183 ---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 |||| |||||| || || | |||||| ||| || ||||| ||||| |||| Sbjct 56707 CTTGTTACCACCCTGGTCAACGTATCGTGCAGTGTTGTTGAAGACACGGAGCATGGGAAC 56648 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCG 119297 |||||| | | ||||| || || || || ||| | | | ||| || | | Sbjct 56647 GATACCGTTGCTGACACCATTGGTACCGGCAATGTAGGAGCC--AGTTCCTCGGATGTTG 56590 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 ||||||| | ||| ||||| || || ||| ||||| ||||| | |||| || Sbjct 56589 TGGATGTTGAGACCGATACCACCAGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 56530 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 ||||||| || |||||||||||| |||| | | || ||||| || ||| | || Sbjct 56529 TCGTAGATACCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGG 56470 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 119476 || ||| ||||||||||||||||| || || | ||||| |||| | || | || || Sbjct 56469 GGGTGGGGAGTACCAGCGTTGAAGAGGGTGGGGGAAGCGTGTGTGAAGA-ACTTCTGCGA 56411 Query 119477 CATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 119536 ||| | ||||||||| | | || ||||| || ||||| ||||| | | ||| Sbjct 56410 CATGAGATTGTAGGTCTCGATGGCGCTTTCGATGTCCTCGCCGTGGATACCAACAGCGAC 56351 Query 119537 CCGCATAAACATGTATTGGGG 119557 ||||| | ||||| ||||| Sbjct 56350 ACGCATGAGCATGTGCTGGGG 56330 >seq69 Length=107628 Score = 132 bits (146), Expect = 6e-26 Identities = 280/416 (67%), Gaps = 4/416 (1%) Strand=Plus/Minus Query 129760 CTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTG- 129818 ||| || | |||||||||||| |||||||| || || |||||||||||| ||| | || Sbjct 12873 CTTTCCTTGCAAGCTGATATTATCCATAAAGTCGAAGGGGTTCTTTGAG--CCATAGTGG 12816 Query 129819 -CTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATC 129877 | || ||| | ||| |||| | || || | |||||||||||||| |||| Sbjct 12815 ACCGGGTTTCCGAGCTGCGTGAGCAATCGGTCGGCCACGTACTCAATGTAGGTGCACATG 12756 Query 129878 TTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCA 129937 || || |||||| || ||||| | || | || || | ||| | |||||| Sbjct 12755 AGCTTGGCGTTCATGCCAATGAGCGAAACGGGCAATGCATCGGTCAAGAAGCTCTTCTCG 12696 Query 129938 ATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAA 129997 || || ||||| || | || | ||| |||||| | ||| | || | | Sbjct 12695 ATCTCTACAGCCTCGGAAATAATCTTGAGAACGGTCTCGGGAGCAGCGCGCTTCTTGAGA 12636 Query 129998 GTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCA 130057 | |||||| |||||| || ||| | ||||| ||||| |||||||| || Sbjct 12635 TGCGAGAAGAGCAAGCAGGCAAAGTCGGTGTGCATGCCCTCATCACGCGAGATGAGCTCG 12576 Query 130058 TTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 130117 || ||||| ||||| ||||||||||| |||||||| | |||||| || | | || Sbjct 12575 TTGGAGAAAGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAC 12516 Query 130118 GAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 || || ||||||||||| || || || ||||| || | |||||| || ||||| Sbjct 12515 GAACCGGAGAAGAAGATACCTTCGACGGCGGCGAAAGCGACGAGACGTTCGGCAAA 12460 >seq82 Length=90256 Score = 127 bits (140), Expect = 3e-24 Identities = 298/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| ||||| || |||||| | || | |||| |||||||||||| ||||| || Sbjct 62423 CTTGAGCAGCGAAGGGTAGAAGTGATCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 62482 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 179851 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | |||| Sbjct 62483 ACCATCGTGATCCTGATCGGTCATGATCATGATACTTCCGTATCGCAAGCT-GTTGACAT 62541 Query 179852 CTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 179911 | | || | ||| || || || ||||| | |||| ||||| | |||| ||| | Sbjct 62542 CGAGGTACTGCTTGCCGTGCTGGAGACCGAGAATCTCCTTGATGGCCTTGATCTCGGCAT 62601 Query 179912 TTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGA 179971 | ||| || | || || || ||||| || | ||| || || || || | Sbjct 62602 TCTTCATGATCTGATCGTGTGTGGCCTCGCGGACGTTGAGAAGCTTACCTCGAAGCGGAA 62661 Query 179972 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 180031 | ||||| ||| ||||| || || ||| || ||| | || ||||| ||||| |||| Sbjct 62662 AGACACCAAAGTTGTCACGCCCGACTTCAGCGATACCGGAGACGGCGAGCGTCTTGGCGG 62721 Query 180032 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCTGCCTTGTTC 180090 | ||||| || || | |||||||| || | || || ||| | || || ||||| Sbjct 62722 AGTCACCTTCGGTGAGAATGAGCGTGCAGTCCTTAGCTT-TGCGACCACCAGCGTTGTTG 62780 Query 180091 GCGTCGTCCAACTTGGGAATACCAGTAATTTTGG---ACTTACGAGCGCCATCTGTCTTC 180147 || || || | ||||||||| |||||| ||| ||| || || || |||||| Sbjct 62781 GCATCTTCGAGCTTGGGAATGTTCGTAATTCTGGTTCGCTTGTGA---CCGTCGGTCTTC 62837 Query 180148 TTGAGTTCCTTCATCTCCTTGAA 180170 ||||| ||| || |||||| Sbjct 62838 TTGAGGGCCTGGTCCTGCTTGAA 62860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618335941150400