Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq27421 140 7e-28 seq50444 134 3e-26 >seq27421 Length=7303 Score = 140 bits (154), Expect = 7e-28 Identities = 263/383 (69%), Gaps = 8/383 (2%) Strand=Plus/Plus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| ||| || ||||| |||||||| ||||| ||||| |||||||| |||| ||||| Sbjct 1515 TTTATCAGGCTTCAACGTCTGAACTTTATGGTTTGGTTCAGGAAATTCCACAAAAAGAAA 1574 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTT 61203 || || ||||| || ||||| || |||| ||| |||||| | || || ||||||||| Sbjct 1575 CTACGCCATTTTACCCACGTAGTCCTTATGCTGTAGCAAAAATGTATGCATACTGGATTA 1634 Query 61204 GTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACG 61263 | ||| || || || | ||||| |||| || ||||| ||| | ||||| || | Sbjct 1635 CTGTAAACTATCGTGAAGCTTATGGTATGTATGCGTGTAATGGGATCTTATTCAACCATG 1694 Query 61264 AGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGG--TTGCAAA 61321 | ||| | | || | ||||| || || |||||||| | | || | || || Sbjct 1695 AATCTCCGCGTCGTGGCGAAACATTTGTAACGCGCAAAATTAC--ACGTGGCATGGCGAA 1752 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTG 61381 |||| | || | |||| | || ||| | || ||||| || | ||||||| Sbjct 1753 TATTGCCCAAGGCCTTGAAACAGCAATCTATATGGGCAACATGGATGCACTGCGAGATTG 1812 Query 61382 GGGATATGCGGAAGATTATATC--GAGGCTATGTGGTTGATGTTGCAACAAGATACTCCA 61439 |||| | || |||||||| || | || | ||| ||||| |||||||||| ||| Sbjct 1813 GGGACACGCTAAAGATTATGTCAAAATGCAA--TGGATGATGCTGCAACAAGAGCAGCCA 1870 Query 61440 GATGACTACGTTATTGCGACTGG 61462 || |||| || |||||||| || Sbjct 1871 GAAGACTTTGTGATTGCGACGGG 1893 >seq50444 Length=3642 Score = 134 bits (148), Expect = 3e-26 Identities = 310/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 61011 ACTGCAAATGTAGACGCTCTTGGTGTTCTGCGTTTGTTAGACGCCGTTCGTATAGCAGGT 61070 || ||| |||| || || | ||| ||||||| ||||||| || | || || | || Sbjct 1050 ACAGCAGATGTTGATGCCATCGGTACTCTGCGTCTGTTAGAAGC-GATCAGATTTCTGGG 992 Query 61071 TTGAACT-------CTCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCA 61123 || |||| || | ||| |||||||||||| |||||||| ||||| || || Sbjct 991 TTTAACTAAAAAAACTAAATTTTATCAAGCATCAACCTCTGAACTTTATGGTCTGGTGCA 932 Query 61124 AGAAATTCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAA 61183 ||| || || |||| ||||| ||| || || || || || ||||| |||| ||| || || Sbjct 931 AGAGATACCCCAAAAAGAAACGACACCATTCTACCCACGCAGCCCTTATGCTGTGGCTAA 872 Query 61184 ACTATACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAA 61243 | | || || ||||||||| || || ||||| || || ||||||| || ||||| Sbjct 871 AATGTATGCATACTGGATTACCGTCAACTATCGCGAATCTTACGGAATGTATGCCTGTAA 812 Query 61244 CTCGATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAAT 61303 | ||||| || |||||||| ||| | || | || || || |||||||| Sbjct 811 CGGGATTTTGTTTAATCACGAATCTCCACGCCGTGGCGAAACTTTCGTAACACGTAAAAT 752 Query 61304 TACGAAGGCGG--TTGCAAATATTTTTAACGGTGTCGAAA-AATGCATGTATCTAGGAAA 61360 || | | || | || |||||| | | || | |||| | || | ||| | || || Sbjct 751 CAC--ACGTGGTATGGCGAATATTGCTCAAGGACTTGAAACTACGC-TCTATATGGGCAA 695 Query 61361 CATAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGAT 61420 ||| || | | |||||||| |||| |||||||| | | |||| |||| Sbjct 694 CATGGATGCACTCCGCGATTGGGGCCATGCAAAAGATTATGTAAAAATGCAGTGGATGAT 635 Query 61421 GTTGCAACAAGATACTCCAGATGACTACGTTATTGCGACTGG 61462 | |||| || || || || || |||| |||||||| || || Sbjct 634 GCTGCAGCAGGAAACGCCTGAGGACTTTGTTATTGCAACGGG 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056057995889000