Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq33108 187 3e-42 seq49234 134 1e-26 seq31280 125 8e-24 seq50823 114 1e-20 seq34305 96.9 4e-15 seq34300 89.7 6e-13 >seq33108 Length=3479 Score = 187 bits (206), Expect = 3e-42 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 63557 TTACAAACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63616 ||| |||||||| ||||||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 63617 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63676 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 63677 CTTAACTGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63736 || || || |||||||| |||||| | ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 63737 TTC 63739 ||| Sbjct 2788 TTC 2786 >seq49234 Length=879 Score = 134 bits (148), Expect = 1e-26 Identities = 157/205 (77%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 65180 AATGTAACATGACCTGCGCCAAGGATAAAAGTAGGACTGATTTTAAAATCACGAACACGT 65239 |||||||||||||||| || | || | |||| |||||||||||||||| | ||| Sbjct 375 AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAATCATTGATTCGT 433 Query 65240 TTACC-GTTAGCAACATGCTTACGAACTGCACCAAAAACACGCGGCAATTCACGATATTC 65298 ||||| | | | || ||||||||||| ||||| || ||||| ||||||||||| ||||| Sbjct 434 TTACCAGCTTG-TACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTC 492 Query 65299 AGCCATTAAGTGTTGGTCAGCCAATTCAGATACTAAAGTA--AGGTTGATACGAGTCATT 65356 |||||| | ||||||||||| ||||| |||| ||| || |||||||| |||| | Sbjct 493 AGCCATAAGATGTTGGTCAGCTAATTCTTGTACT--GGTACGAGATTGATACGGGTCA-T 549 Query 65357 TTAGTGTTCTCCTGTAGTTGATAGG 65381 | | ||||||| || |||||| Sbjct 550 TCAAAATTCTCCTTTATAAGATAGG 574 >seq31280 Length=10079 Score = 125 bits (138), Expect = 8e-24 Identities = 204/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 141671 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 141730 || || || ||||| || ||||| ||||| | |||||| |||| || || ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 141731 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 141789 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 141790 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 141849 ||||||||| | || ||||| ||||| ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 141850 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAAT 141909 || ||| ||| |||||| ||||||| || |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 141910 CATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 141960 ||| ||||||||||||| || ||||||| || | |||| ||||| Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAAT 1631 >seq50823 Length=3276 Score = 114 bits (126), Expect = 1e-20 Identities = 140/187 (75%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 65174 TAAAAGAATGTAACATGACCTGCGCCAAGGATAAAAGTAGGACTGATTTTAAAATCACGA 65233 ||||| || |||||||| |||| ||||| ||| | | ||| |||||||||||| | Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 65234 ACACGTTTACCGTTAGCAACATGCTTACGAACTGCACCAAAAACACGCGGCAATTCACGA 65293 | | ||| || | |||| || || | ||||||||||| ||||| || ||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 65294 TATTCAGCCATTAAGTGTTGGTCAGCCAATT-CAGATACTAAAGTAAGGTTGATACGAGT 65352 ||||||||||| | ||||| || ||||||| | || | || ||| || || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAA-ATTTATCCGAGT 305 Query 65353 CATTTTA 65359 ||||||| Sbjct 306 CATTTTA 312 >seq34305 Length=2218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 63570 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 63629 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 63630 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 63689 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 63690 TCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 63742 || |||| | || |||||||| ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq34300 Length=21418 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/108 (81%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 45651 GCTGCATGTCACCATGCAGTTCAGACTATATCTTCAACTCT-TAGAGTTGTCTGCCGTTT 45709 |||||||||| |||||||| ||||| ||||||||| | | ||| | || | | |||| Sbjct 7510 GCTGCATGTCGCCATGCAGACCAGACCATATCTTCATCCCCGTAGGGATGCCCACTGTTT 7569 Query 45710 CGGGT-CGCTTGA-CCCTACTCCCTTACATTCATCAGGGATAGTCGTT 45755 || || | ||||| |||||| |||||||||||||||||| | |||||| Sbjct 7570 CGAGTTCACTTGAACCCTACGCCCTTACATTCATCAGGGCTGGTCGTT 7617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539481486044000