Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq43257 123 1e-23 seq47236 109 2e-19 seq44976 89.7 2e-13 >seq43257 Length=1618 Score = 123 bits (136), Expect = 1e-23 Identities = 186/263 (71%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 25776 GCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCG 25835 || ||||| || |||| | | | || || ||||||||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 25836 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGA 25895 ||||||||||||| |||||||| |||||||| || | || || ||||| ||| | | Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 25896 ATTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGT 25955 | || ||||| ||||| ||||| || | || || | ||||| ||||| Sbjct 754 CTAAACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGACGGC 695 Query 25956 GGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAG 26015 || | ||| ||||| ||||| || || ||||||||| || || ||| ||||||||| Sbjct 694 GGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGACCAG 635 Query 26016 GAGAGCGCGCTGGCGTGCTGGGG 26038 || | ||| | |||||||| Sbjct 634 GAATCAGAGCTCACATGCTGGGG 612 >seq47236 Length=1665 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27144 AAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGGAACAGGCGAATGCCACCATTACTGAC 27203 ||| ||||||| ||||| | | || ||| | ||| || ||||| |||| |||| Sbjct 744 AAATCGCAGCGGGATAAGGCCTCTGGCGAACTGAAGTTGGCAAACGCCACGATTAATGAC 685 Query 27204 ATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCC 27263 |||||||| || ||||| || |||||||| |||||||| ||||| | | ||||||||| Sbjct 684 ATGCAGGTACGTCAGCGAGACGTTGCTGCCCTCGATGCGAAATATACCAAGGAGTTAGCT 625 Query 27264 GATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 27311 ||||||| |||||||||| | || || ||| | | || |||||| Sbjct 624 GATGCGAACACTGAAAATGACAGGCTTCGCGCTAAGCTGGCTGCTGGT 577 >seq44976 Length=557 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 16192 CCGGAAGACTGGAAAGACCTGTTCACTGCCCT-GTGGCTTAAGACCAAAAAACTGAAGCA 16250 || || |||||||||||||| |||||||||| || || ||||||||||| |||| Sbjct 218 CCTGACGACTGGAAAGACCTCATCACTGCCCTCGTAGCA-AAGACCAAAAACGAACAGCA 160 Query 16251 ACGAAGTGTGCCTGGTATCGACGGTGGCGTTGTCATGCTTGGCGTGCGTACCAGCAAAAT 16310 || | | || ||||||| ||| ||||| |||||| | || ||| || |||||||| Sbjct 159 GCGCACCGCACCCGGTATCGGCGGAGGCGTGGTCATGTTCGGATCGCGGACAAGCAAAAT 100 Query 16311 GC-GGAAGGCCAGCATGACTGAGCTTATCGAAATCATGTTCTGGTTCGGCTCAGAGCGCA 16369 || || | || | ||| ||| ||||||| || | |||||| ||| | |||| | Sbjct 99 GCGGGTAAGCGA-AATGGTTGAAGTTATCGAGGCAATTTACTGGTTTGGCACTGAGCAAA 41 Query 16370 ACGTG 16374 ||||| Sbjct 40 ACGTG 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194591239934400