Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq48793 174 6e-39 seq43257 123 1e-23 seq47236 109 2e-19 seq44976 89.7 2e-13 seq64133 82.4 3e-11 >seq48793 Length=1217 Score = 174 bits (192), Expect = 6e-39 Identities = 509/774 (66%), Gaps = 25/774 (3%) Strand=Plus/Minus Query 14068 TTCGTCCGAGAATTCTGG-CGAATCCTCTGAC-CAGCCA--GAAAACGATCTTTCTGTGG 14123 ||||| |||||||||| ||||||| | || || || ||||| ||| || |||| Sbjct 1215 TTCGTTTGAGAATTCTGAACGAATCCCCAAACTCACCCTCTGAAAATGATTTTCCTGT-- 1158 Query 14124 TTAAACCGGATGCTGCAAT----TCAG--AGCGGCAGCAAGTGGGGAACAGCAGAAGACC 14177 ||| || ||||| || || ||| | |||| ||||||||| || | || |||| Sbjct 1157 -TAAGCCAGATGCAGCGATCAGTTCACCCAAAGGCAACAAGTGGGGCTCACCTGACGACC 1099 Query 14178 TGACCGCCGCAGAGTGGATGTTTGACATGGTGAAGACCATCGCACCATCAGCCAGAAAAC 14237 || ||| |||||||| | | | || | | ||| || ||| | || | Sbjct 1098 TGCATTGCGCCGAGTGGATCGCGGGCCTTGTCGCGTCAATCCGTCCGGCAGTGCGCAAGC 1039 Query 14238 CGAATTTTGCAGGGTGGGCTAACGATATCCGCCTGATGCGTGAACGTGACGGACGTAACC 14297 | || | || ||||| || || | ||||||||||||||| ||||| || | | Sbjct 1038 CAAACCTCACAACCTGGGCCAATGACGTTCGCCTGATGCGTGAAATCGACGGGCGCACAC 979 Query 14298 ACCGCGACATGTGCGTGCTGTTCCGCTGGGCATGCCAGGACAACTTCTGGTCCGGTAACG 14357 ||||||| || |||| ||||| ||||| ||| || ||||||| | ||| Sbjct 978 ACCGCGAGATCTGCGAATTGTTCAAATGGGCCAGCCGCGATGCGTTCTGGTGCTCAAACA 919 Query 14358 TGCTAAGTCCGGCCAAACTCCGCGACAAGTGGACCCAACTCGAAATCAACCGTAACAAGC 14417 | || ||||||||||| |||| |||||| | ||| || | ||| || || Sbjct 918 TTCTTTCGCCGGCCAAACTGCGCGCTAAGTGGGACACGCTCTGTCTCCAGCGTGAC--GC 861 Query 14418 AACAGGCTGGCGTGACAGCTGGAAAACCAAAACTCGACCTGACAAACACTGACTGGATTT 14477 || | | || | |||| | ||| || ||| | ||||| |||||||| Sbjct 860 CAC-GCCACGCAGGGCAGCAGCG---CCAGCCCTGGACTACAACAACACCGACTGGATCC 805 Query 14478 ACGGGGTGGATTTATGAAAAACATCGCCGCACAGATGGTTAACTTTGACCGTGAGCAGAT 14537 |||||||| ||||||| ||| || | ||||||||||||| |||||||||| | || Sbjct 804 ACGGGGTGATCGAATGAAAAGCATTGCTGAACAGATGGTTAACCTTGACCGTGAAAACAT 745 Query 14538 GCGTCGGATCACCAACAACATGCCGGAA---CAGTACGACGAAAAGCCGCAGGTACAACA 14594 | || | | ||| || ||||| ||| |||| | | || ||||| | | | Sbjct 744 GAAACGTGTTGCTAACGGTCTGGCGGAAATCCAGGACGATGCACCGCAGCAGGCAGAGCG 685 Query 14595 GGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTTTCCCGGCGAGTCT 14654 |||||| | || | || | || | ||||| | || |||||||||| | Sbjct 684 GGTAGCCGAAATTTTTAATACGCTCTTTGGTCAGTTGCGTGCGGCTTTCCCGGCTGCCAT 625 Query 14655 GGCTAACCGGGA---CCAGAACGAACTGAATGAAATCCGCCGCCAGTGGGTTCTGGCTTT 14711 ||| || | | |||| | ||||| || ||| |||| ||||||||| || || | || Sbjct 624 GGCAAATCTGCGTACCCAGGAGGAACTAAACGAATTCCGGCGCCAGTGGCTTTTGTCATT 565 Query 14712 CCGGGAAAACGGGATCACCTCGATGGAACAGGTTAACGCAGGAATGCGCGTAGCCCGTCG 14771 ||| || |||||||||||| | |||| ||||| ||||| || ||||| | ||||||| Sbjct 564 CCGCGAGAACGGGATCACCACAATGGCTCAGGTCAACGCTGGCATGCGGGCAGCCCGTAA 505 Query 14772 GCAGAATCGACCATTTCTTCCATCACCCGGGCAGTTTGTTGCATGGTGCCGGGA 14825 ||| | ||| || || || || || || ||||| || || |||||||| || Sbjct 504 ACAGGAAAAACCCTTCCTGCCTTCCCCGGGTCAGTTCGTCGCCTGGTGCCGTGA 451 >seq43257 Length=1618 Score = 123 bits (136), Expect = 1e-23 Identities = 186/263 (71%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 26308 GCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCG 26367 || ||||| || |||| | | | || || ||||||||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 26368 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGA 26427 ||||||||||||| |||||||| |||||||| || | || || ||||| ||| | | Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 26428 ATTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGT 26487 | || ||||| ||||| ||||| || | || || | ||||| ||||| Sbjct 754 CTAAACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGACGGC 695 Query 26488 GGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAG 26547 || | ||| ||||| ||||| || || ||||||||| || || ||| ||||||||| Sbjct 694 GGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGACCAG 635 Query 26548 GAGAGCGCGCTGGCGTGCTGGGG 26570 || | ||| | |||||||| Sbjct 634 GAATCAGAGCTCACATGCTGGGG 612 >seq47236 Length=1665 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27676 AAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGGAACAGGCGAATGCCACCATTACTGAC 27735 ||| ||||||| ||||| | | || ||| | ||| || ||||| |||| |||| Sbjct 744 AAATCGCAGCGGGATAAGGCCTCTGGCGAACTGAAGTTGGCAAACGCCACGATTAATGAC 685 Query 27736 ATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCC 27795 |||||||| || ||||| || |||||||| |||||||| ||||| | | ||||||||| Sbjct 684 ATGCAGGTACGTCAGCGAGACGTTGCTGCCCTCGATGCGAAATATACCAAGGAGTTAGCT 625 Query 27796 GATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 27843 ||||||| |||||||||| | || || ||| | | || |||||| Sbjct 624 GATGCGAACACTGAAAATGACAGGCTTCGCGCTAAGCTGGCTGCTGGT 577 >seq44976 Length=557 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 16581 CCGGAAGACTGGAAAGACCTGTTCACTGCCCT-GTGGCTTAAGACCAAAAAACTGGAGCA 16639 || || |||||||||||||| |||||||||| || || ||||||||||| |||| Sbjct 218 CCTGACGACTGGAAAGACCTCATCACTGCCCTCGTAGCA-AAGACCAAAAACGAACAGCA 160 Query 16640 ACGAAGTGTGCCTGGTATCGACGGTGGCGTTGTCATGCTTGGCGTGCGTACCAGCAAAAT 16699 || | | || ||||||| ||| ||||| |||||| | || ||| || |||||||| Sbjct 159 GCGCACCGCACCCGGTATCGGCGGAGGCGTGGTCATGTTCGGATCGCGGACAAGCAAAAT 100 Query 16700 GC-GGAAGGCCAGCATGACTGAGCTTATCGAAATCATGTTCTGGTTCGGCTCAGAGCGCA 16758 || || | || | ||| ||| ||||||| || | |||||| ||| | |||| | Sbjct 99 GCGGGTAAGCGA-AATGGTTGAAGTTATCGAGGCAATTTACTGGTTTGGCACTGAGCAAA 41 Query 16759 ACGTG 16763 ||||| Sbjct 40 ACGTG 36 >seq64133 Length=746 Score = 82.4 bits (90), Expect = 3e-11 Identities = 164/237 (69%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 27744 GCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCG-- 27801 |||||||| | |||||| | | ||||| |||||| ||| ||| || ||||||||| Sbjct 430 GCGCCAGCTTTCGGTTGCTTCCATTGATGCCAAATACACGAAGGA-TTGGCCGATGCGCA 372 Query 27802 AGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATC 27861 | | | | || ||||||| ||||| | |||| |||||||||||| || Sbjct 371 AAAACCATTAGCGA---TCTGCGTAGGGATGTCGATTCTGGGGCTAAGCGCCTGCGCGTC 315 Query 27862 AACGCCACCTGC--TCCGGTACCGTGCG-TGAAGCCACCGGCACCTCCGGCGTGGATAAT 27918 |||| || || | | || || | || || ||| |||| |||||||| || Sbjct 314 TCAGCCAAATGTGTTCGGCCAGTGTCCGGTAAATCCTCCGCCACCC---GCGTGGATGAT 258 Query 27919 GCAACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGAG 27975 | | |||||||||| ||||| ||||| | ||||||||||||| |||||||||| Sbjct 257 GATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATTATTTCACCCTCAGAGAG 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196917235315200