Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq56734 127 5e-25 seq39396 114 3e-21 seq44328 96.9 8e-16 seq53235 95.1 3e-15 >seq56734 Length=385 Score = 127 bits (140), Expect = 5e-25 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23584 GCGTGTTCAGTAAGATGATTAGACGCTAAGTGTGCATATCGCCTTACCATTTCGACTGAT 23643 || ||||| || || || |||| || | ||||||||| | | ||||||||||| | Sbjct 265 GCATGTTCGGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTACCATTTCGATGCTT 206 Query 23644 TCCCATCCACCCATTTCTTGTAAAACAGAAAGTGGAACGCCAGACTGAATTAACCAGCTA 23703 |||||||| |||||||| || || | |||||||||||||| | |||||| | |||||| Sbjct 205 TCCCATCCTCCCATTTCCTGCAATGCCGAAAGTGGAACGCCTGCCTGAATCAGCCAGCTT 146 Query 23704 GCCCAAGTATGTCTCAGATCATGAAAGCGAAAATTTTCTATTCCGGCTCGTTTTAATGCC 23763 ||||| ||||| | | |||||||| || |||| || || || || || || | | | Sbjct 145 GCCCAGGTATGACGTAAGTCATGAAAACGGAAATCCTCAATGCCTGCCCGCTTGAGTCCT 86 Query 23764 GCCCTCCATGCCGTATTAGAATCGACCCGCATTTTTCT 23801 || ||| ||||| ||| ||| |||||||| || Sbjct 85 ATCCGCCACGCCGTGTTATCATCACAGCGCATTTTCCT 48 >seq39396 Length=387 Score = 114 bits (126), Expect = 3e-21 Identities = 153/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 23590 TCAGTAAGATGATTAGACGCTAAGTGTGCATATCGCCTTACCATTTCGACTGATTCCCAT 23649 ||||| || || |||| || | ||||||||| | | ||||||| | | || ||||||| Sbjct 182 TCAGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTACCATT-CTA-TGCTTCCCAT 239 Query 23650 CCACCCATTTCTTGTAAAACAGAAAGTGGAACGCCAGACTGAATTAACCAGCTAGCCCAA 23709 || |||||| || |||| ||||||||||||| || | |||||| | |||||| ||||| Sbjct 240 CCGCCCATTCCT-GTAATGCAGAAAGTGGAACACCTGCCTGAATAAGCCAGCTTGCCCAG 298 Query 23710 GTATGTCTCAGATCATGAAAGCGAAAATTTTCTATTCCGGCTCGTTTTAATGCCGCCCTC 23769 ||||| | | |||||||| || |||| || || || || || || | | | || | Sbjct 299 GTATGCCGTAAGTCATGAAAACGGAAATCCTCAATGCCTGCCCGCTTGAGTCCTATCCGC 358 Query 23770 CATGCCGTATTAGAATCGACCCGCATTTT 23798 || ||||| ||| ||| |||||||| Sbjct 359 CACGCCGTGTTATCATCACAGCGCATTTT 387 >seq44328 Length=3229 Score = 96.9 bits (106), Expect = 8e-16 Identities = 142/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 23845 GTATGTACGAATACCCATTTTTGATGATTACCCAATTGTCGCGTCAGAATACAGCAAGCC 23904 || || ||||| |||||| | |||||| || | || | |||| | | ||| || Sbjct 3216 GTGTGAACGAA-ACCCATCGTGAATGATTTCCTATCTGCTCCTTCAGCACCCGGCATGCG 3158 Query 23905 GTATCGTTTAGAGCTACACCTATAGCTTTTCCCGATTTGCTGTTTTCTGGCTCTATCCAG 23964 ||||| || || || || || ||||| || |||| |||| ||| || || | |||||| Sbjct 3157 GTATCATTCAGCGCCACGCCAATAGCCTTGCCCGCTTTGGCGTTCTCCGGATTTATCCAT 3098 Query 23965 GCAACTTTTCTTTGCATATCAATTTGTGACCACGCTAAATTAATGATATTTGAACGACGT 24024 || || || ||||||||||||| || | ||| | | || | || |||||||| ||| Sbjct 3097 GCCACCTTCCTTTGCATATCAACCTGCGTCCATTCCAGATCCAGAATGTTTGAACGGCGT 3038 Query 24025 AACCCGGTTGCCAGCGCAAA 24044 |||||||| | || ||||| Sbjct 3037 AACCCGGTGGAGAGAGCAAA 3018 >seq53235 Length=843 Score = 95.1 bits (104), Expect = 3e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16560 GAACACCTTCTTTATACCCCGATGATAAAAGCGGATAATGCCCGATTATTTGATTTTGAA 16619 ||||| | ||||||||||| ||| | ||||| ||| ||| || | |||||| |||| Sbjct 329 GAACATATCCTTTATACCCCAATGTTTAAAGCCGATGGGGCCAGAGTTTTTGATCTTGAG 270 Query 16620 CTGGAAGCTTCAACGGGTGTTGCTCAAATCGCGGATAAGTTATTTCTGTCTGTCACAACA 16679 || || ||||||| || |||| || | || || | |||||| | || | ||| | Sbjct 269 CTTGATTCTTCAACAGGCGTTGAGCAGGTTGCTGAAAGGTTATTCATTTCGGCAACAGCG 210 Query 16680 GACGGCATTAATTACAGCAGAGAACAACTAATAGAACAAAATTCCCCTTTTCAGTATGAC 16739 || || |||||||| ||||||| ||| | || ||| | ||||| |||||| Sbjct 209 GATGGAATTAATTATGGCAGAGAGCAAATGATCCCCTGGAATGCTCCTTTCACCTATGAC 150 Query 16740 AAACGCATTCTCTGGCGACGGATTGGACGCGTGAGAAAAAATATCGGCTT 16789 || || |||||| | || ||||| || || || ||||| || || || Sbjct 149 AAGCGGGCGCTCTGGAGGCGAATTGGCCGTGTCAGGAAAAACATAGGATT 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116574543219600