Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq95708 98.7 1e-15 >seq95708 Length=954 Score = 98.7 bits (108), Expect = 1e-15 Identities = 196/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| ||||| || | ||| ||| | || ||||| ||||| ||||| ||||| Sbjct 62 ATATAGGTATCAATCAAGAGGGAGTAAGTCTCCGAGTGGATGTTTTCCATCATGATCTGG 121 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 |||||||||||||| || ||||| | | ||| || || || ||| || || | | Sbjct 122 AATCCGTAAAAGCAACGAGCTTCTGGCACTTGGACCTCTCCGCTGAAACGCTCAACCAAG 181 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| || |||||||| || ||||| || || | || || ||||| ||| Sbjct 182 TTCTCGTTGACAATGCCGTCAGAGGCAGCGAAGAATGCGAGGATGTGGGAGATGAAGTAT 241 Query 17414 TTTTCGTC--CGGT-GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || ||||| || | | | | ||| || | | ||||||||| | ||| | ||| Sbjct 242 TTCTCGTCGTCGTTCAGACGGTTGTTCCAATCGTGCAGATCTTTGGAGAGATCAATCTCT 301 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || || ||||| || |||| | ||||| || ||||| | |||||| Sbjct 302 TC-GGCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAAT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516702647604000