Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq48793 205 3e-48 seq56092 172 2e-38 seq56093 141 3e-29 seq47236 127 6e-25 seq46655 86.0 2e-12 seq64133 82.4 2e-11 seq64132 82.4 2e-11 >seq48793 Length=1217 Score = 205 bits (226), Expect = 3e-48 Identities = 399/581 (69%), Gaps = 14/581 (2%) Strand=Plus/Minus Query 39343 TGGGCTAACGATATCCGCCTGATGCGTGAACGTGACGGACGTAACCACCGCGACATGTGT 39402 ||||| || || | ||||||||||||||| ||||| || | |||||||| || || Sbjct 1024 TGGGCCAATGACGTTCGCCTGATGCGTGAAATCGACGGGCGCACACACCGCGAGATCTGC 965 Query 39403 GTGCTGTTCCGCTGGGCATGCCAGGACAACTTCTGGTCCGGTAACGTGCTGAGCCCGGCC 39462 | ||||| ||||| ||| || ||||||| | ||| | || |||||| Sbjct 964 GAATTGTTCAAATGGGCCAGCCGCGATGCGTTCTGGTGCTCAAACATTCTTTCGCCGGCC 905 Query 39463 AAACTCCGCGATAAGTGGACCCAACTCGAAATCAACCGTAACAAGCAACAGGCAGGCGTG 39522 ||||| |||| ||||||| | ||| || | ||| || || || | || || | Sbjct 904 AAACTGCGCGCTAAGTGGGACACGCTCTGTCTCCAGCGTGAC--GCCAC-GCCACGCAGG 848 Query 39523 ACAGCCAGCAAACCAAAACTCGACCTGACAAACACAGACTGGATTTACGGGGTGGATCTA 39582 |||| ||| ||| || ||| | ||||| |||||||| |||||||| ||| | Sbjct 847 GCAGC-AGCG--CCAGCCCTGGACTACAACAACACCGACTGGATCCACGGGGTG-ATCGA 792 Query 39583 -TGAAAAACATCGCCGCACAGATGGTTAACTTTGACCGTGAGCAGATGCGTCGGATCGCC 39641 |||||| ||| || | ||||||||||||| |||||||||| | ||| || | || Sbjct 791 ATGAAAAGCATTGCTGAACAGATGGTTAACCTTGACCGTGAAAACATGAAACGTGTTGCT 732 Query 39642 AACAACATGCCGGAA---CAGTACGACGAAAAGCCGCAGGTACAGCAGGTAGCGCAGATC 39698 ||| || ||||| ||| |||| | | || ||||| | ||| |||||| | || Sbjct 731 AACGGTCTGGCGGAAATCCAGGACGATGCACCGCAGCAGGCAGAGCGGGTAGCCGAAATT 672 Query 39699 ATCAACGGTGTGTTCAGCCAGTTACTGGCAACTTTCCCGGCGAGCCTGGCTAACC---GT 39755 | || | || | ||||| | || |||||||||| | |||| || | || Sbjct 671 TTTAATACGCTCTTTGGTCAGTTGCGTGCGGCTTTCCCGGCTGCCATGGCAAATCTGCGT 612 Query 39756 GACCAGAACGAAGTGAACGAAATCCGTCGCCAGTGGGTTCTGGCTTTTCGGGAAAACGGG 39815 |||| | ||| | |||||| |||| ||||||||| || || | || || || |||||| Sbjct 611 ACCCAGGAGGAACTAAACGAATTCCGGCGCCAGTGGCTTTTGTCATTCCGCGAGAACGGG 552 Query 39816 ATCACCACGATGGAACAGGTTAACGCAGGAATGCGCGTAGCCCGTCGGCAGAATCGACCA 39875 |||||||| |||| ||||| ||||| || ||||| | ||||||| ||| | ||| Sbjct 551 ATCACCACAATGGCTCAGGTCAACGCTGGCATGCGGGCAGCCCGTAAACAGGAAAAACCC 492 Query 39876 TTTCTGCCATCACCCGGGCAGTTTGTTGCATGGTGCCGGGA 39916 || ||||| || || || ||||| || || |||||||| || Sbjct 491 TTCCTGCCTTCCCCGGGTCAGTTCGTCGCCTGGTGCCGTGA 451 >seq56092 Length=894 Score = 172 bits (190), Expect = 2e-38 Identities = 182/237 (77%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 38369 GCAAACAAACGCAACGAGGCTCT-ACGAATCGAGAGTGCGTTGCTTAACAAAATCGCAAT 38427 ||||| |||||||||||||| || | || || | || |||||||| ||||| |||||| | Sbjct 593 GCAAAGAAACGCAACGAGGCGCTGAAGATTCAA-AGCGCGTTGCTCAACAAGATCGCATT 535 Query 38428 GCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCGCAGATCAGCAGGTG 38487 ||| || || ||||||||||| | |||||| || || |||||| | ||||| ||| | || Sbjct 534 GCTCGGCACCGAGAAGACAGCAGCAGCTGTTGGTGTGGATAAGGCACAGATAAGCCGCTG 475 Query 38488 GAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTTGAATGGGGGGTCGT 38547 ||| | |||||| | || |||||| ||||| | ||||| || || || ||||| |||| Sbjct 474 GAAACGCGACTGGCTGCCGAAGTTCGCAATGTTACTTGCAGTGCTGGAGTGGGGAATCGT 415 Query 38548 TGACGACGACATGGCTCGATTGGCGCGACAAGTTGCTGCGATTCTCACCAATAAAAA 38604 ||| ||||| ||||||| || ||||| || || || ||| || || || |||| Sbjct 414 TGATGACGAGATGGCTCATTTAGCGCGGCAGGTGGCAATGATACTGACAAAAGAAAA 358 >seq56093 Length=508 Score = 141 bits (156), Expect = 3e-29 Identities = 147/189 (78%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 38369 GCAAACAAACGCAACGAGGCTCT-ACGAATCGAGAGTGCGTTGCTTAACAAAATCGCAAT 38427 ||||| |||||||||||||| || | || || | || |||||||||||||| |||||| | Sbjct 188 GCAAAGAAACGCAACGAGGCGCTGAAGATTCAA-AGCGCGTTGCTTAACAAGATCGCATT 130 Query 38428 GCT-TGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCGCAGATCAGCAGGT 38486 ||| || || ||||| ||||| | ||||| || || |||||| | ||||| ||| | | Sbjct 129 GCTCCGGCACAGAGAAAACAGCCGCCGCTGTTGGTGTGGATAAGGCACAGATAAGCCGCT 70 Query 38487 GGAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTTGAATGGGGGGTCG 38546 |||| | |||||| | || |||||| ||||| | || || || || |||||||| ||| Sbjct 69 GGAAACGCGACTGGCTGCCTAAGTTCGCAATGTTACTAGCAGTGCTGGAATGGGGAATCG 10 Query 38547 TTGACGACG 38555 |||| |||| Sbjct 9 TTGATGACG 1 >seq47236 Length=1665 Score = 127 bits (140), Expect = 6e-25 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 46092 GAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCT 46151 ||||||||| |||| ||||| | |||| |||||||||| | |||||||| || |||||| Sbjct 717 GAACTGAAGTTGGCAAACGCCACGATTAATGACATGCAGGTACGTCAGCGAGACGTTGCT 658 Query 46152 GCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGA 46204 || |||||||| ||||| || ||||||||||||||||| || |||||||||| Sbjct 657 GCCCTCGATGCGAAATATACCAAGGAGTTAGCTGATGCGAACACTGAAAATGA 605 >seq46655 Length=2837 Score = 86.0 bits (94), Expect = 2e-12 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 22403 TTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAAC-GAAGGA-AGAAACCTCGTT 22460 |||||||||||||||||||| |||||||||| |||||||| |||| | | ||| | |||| Sbjct 2282 TTGCGCCGCTTCAGGATGCTTCAGATCTGGATATTGCAACTGAAGAAGAAAAAGCGCGTT 2341 Query 22461 GCTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAACCGTGTTGATAC 22508 | ||||||| || ||||| ||| |||| ||||| || ||||| Sbjct 2342 --TACTTTCCTGGAAAAAATATCGAGTGATGCTTAACCGCGTGGATAC 2387 >seq64133 Length=746 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 46282 CCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGG 46341 || ||||| || |||||||| ||| | | ||||||||| ||||| ||||| | |||| Sbjct 280 CCTCCGCCACCCGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGG 221 Query 46342 ATTATTTCACCCTCAGAGAG 46361 |||||||||||||||||||| Sbjct 220 ATTATTTCACCCTCAGAGAG 201 >seq64132 Length=632 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 46282 CCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGG 46341 || ||||| ||||||||||| ||| | | ||||||||| ||||| ||||| | ||| Sbjct 196 CCTCCGCCACCGGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGTGGG 137 Query 46342 ATTATTTCACCCTCAGAGAG 46361 |||||||||||||||||||| Sbjct 136 ATTATTTCACCCTCAGAGAG 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154844835350400