Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq51865 93.3 5e-14 seq95708 84.2 3e-11 >seq51865 Length=821 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 ||||||||||| ||||| |||||||| ||||||||||| || ||||| || ||||| || Sbjct 533 TCGTTGGAAAAGGTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCG 474 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 || || ||| ||||| |||||||| || || || || || Sbjct 473 AAAGAGCCACTGAAGAAGATTCCTTCCACCGCAGCGAACGC 433 >seq95708 Length=954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 220/333 (66%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| || ||||| || || ||||| || | ||||| | ||| ||||||||| Sbjct 17 GTCTCAATTGCATTGAAAAGGTAGTTGCGTTGAGCGTGCTCTTTGATATAGGTATCAATC 76 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 || || || | ||||| || |||||||| || || || |||||||| || || Sbjct 77 AAGAGGGAGTAAGTCTCCGAGTGGATGTTTTCCATCATGATCTGGAATCCGTAAAAGCAA 136 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | ||| || | | || || ||| | || || || | || || || || || || Sbjct 137 CGAGCTTCTGGCACTTGGACCTCTCCGCTGAAACGCTCAACCAAGTTCTCGTTGACAATG 196 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 |||||| ||| || || || || | | || || || ||||| ||||| | ||| Sbjct 197 CCGTCAGAGGCAGCGAAGAATGCGAGGATGTGGGAGATGAAGTATTTCTCGTC-GTCGTT 255 Query 24597 ----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 | || |||||||| | | |||||| || | ||| | ||||| | ||||| || Sbjct 256 CAGACGGTTGTTCCAATCGTGCAGATCTTTGGAGAGATCAATCTCTTCGGC-GTCCAGAA 314 Query 24653 TGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || ||||| ||||| || ||||| | ||| || Sbjct 315 GGAAGCCTCGGCCTTCTTGTACATTTGCCAAAT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592754575944000