Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq43510 178 2e-39 seq60516 134 2e-26 seq19617 132 6e-26 seq2347 122 1e-22 seq28361 95.1 1e-14 >seq43510 Length=3912 Score = 178 bits (196), Expect = 2e-39 Identities = 214/287 (75%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 145695 GTGGTTG-AGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC-CCCGGGCTCGAGG 145752 ||||||| || || | |||||| || ||||| ||| | ||| || ||| || | ||| Sbjct 581 GTGGTTGGAGTTACAGGTGCGCATCGCCCAGCGTGTGCACGAAATCGCCCACGCCC-AGG 639 Query 145753 CCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACC 145812 || ||| || || ||||||| ||||||||| | ||||||||| |||||||| ||||| Sbjct 640 CCGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACG 699 Query 145813 CCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACG 145872 ||||| ||||| || ||||||||||||||||||| ||||| ||| | ||||| Sbjct 700 CCCAGGAAAATGTCGCCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGACCACG 759 Query 145873 TAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTC 145932 ||||||||| ||||| |||||| ||| ||| ||||| ||||| || ||| |||| Sbjct 760 TAGAACTGGAACAGGCTGTGGCACGGCATCAGCGCCATCTGCGGCAGTTCGGCCACGTTC 819 Query 145933 CAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTC 145979 |||||| ||| || |||| || || || || | ||||||||| Sbjct 820 CAGGCGCTGATCACCAGCCGCCGCGAATCCGGATTGCGCTTGATCTC 866 >seq60516 Length=573 Score = 134 bits (148), Expect = 2e-26 Identities = 160/216 (74%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 145788 GTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTG 145847 ||||||||| |||||||| ||||| ||||| ||||| || ||||||||||||||| Sbjct 573 GTAGCTGGCGATGTTGAACGGCACGCCCAGGAAAATGTCGCCGCTGCGCTGGTACAGCTG 514 Query 145848 GCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGC 145907 |||| ||||| ||| | || || ||||||||| |||| ||||| ||||||||||| Sbjct 513 GCAGCTGAGCTTGCCGTCGGCGACATAGAACTGGAACAGCGCATGGCACGGCGGCAGGGC 454 Query 145908 CATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTT 145967 ||| || || |||||| |||||||| | || || |||| | || ||||| Sbjct 453 CATCTCGTCCACCAGCGCCGGATTCCAGGCCGAGACGATCAGCCGGCGCGAGTCCGGGTT 394 Query 145968 CCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTC 146003 ||||||||| | | ||||| | |||| |||||| Sbjct 393 -CTCTTGATCATCTCGATCAGCTTGCTGATCTGGTC 359 >seq19617 Length=1959 Score = 132 bits (146), Expect = 6e-26 Identities = 211/299 (71%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 145970 TCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCT 146029 ||||||||| |||| | ||| |||||| || ||||||| ||| ||| || |||| Sbjct 1824 TCTTGATCTTGTCTATAACGTCTGCGAGCTGATCGACGCCCTTGCCCGTGTAGTCCGTCT 1765 Query 146030 TGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGT 146089 | | ||||||||| | || || ||||||| ||| ||||||||||| ||||| ||||||| Sbjct 1764 TTGCATCCACGTACTCTGCGCCAAAGTGCCGCCATTGGAACCCGTACACGGGTCCCAGGT 1705 Query 146090 CCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGT 146149 | || ||| | |||| || ||| | | ||||| || || || ||||| | | Sbjct 1704 CGCCTACCTCGCGGTGCGTGAGGCCGAGGTTGTCTAGGAACTCGCGTGAGCCGTTTCCAT 1645 Query 146150 CCCAGATCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAA 146207 |||| ||||||||||| | | | ||| || || ||| ||| ||| ||||| Sbjct 1644 CCCATATCTTGACGCCTGCGTTACTGAGGGC-CA-GCGAGGAGGTGTTGCCCTCTATGAA 1587 Query 146208 CCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 |||||||||||| ||| ||| | | ||| || | ||||||||| || || |||| Sbjct 1586 CCAGAGCAGCTCGGCGATGACGGCGCGGAGGAACACGCGCTTGGTGGTGAGTAGCGGGA 1528 >seq2347 Length=4848 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 |||||| || || |||| || || |||| ||||| ||||| ||||||||| | || Sbjct 1524 GATGAATTCGCCCGGCTGCAGCCCGGTGACCTGGGCCACCATCAGGGTCAGCAGCGCATA 1583 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 |||||| |||||||||||||| || || ||||| | |||||||| ||||||||||| Sbjct 1584 GCTGGCGATGTTGAAGGGCACGCCGAGGAAGATGTCGGCGGAGCGCTGATACAGCTGGCA 1643 Query 145851 GGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 | || || | || || ||||||||| |||| ||||| |||||||| ||||| Sbjct 1644 GCTCAGGCGACCATCGGCGACATAGAACTGGAACAGCGCATGGCACGGCGGCAGCGCCAT 1703 Query 145911 GGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945 || || ||||| |||||||| | || || Sbjct 1704 CTCGTCCACCAGGGCCGGATTCCAGGCCGAGACGA 1738 >seq28361 Length=3781 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 145688 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCC-CAGGACGTGGATGAAGTCCCCGGGC 145746 |||||| ||||||| ||| | ||||| || || | || | | | ||||| ||| | Sbjct 2090 GCTCCAGGTGGTTGCTGTAAAGGTGCGTATCGCCGCCGGTCCAG-ACAAAGTCACCGACC 2148 Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806 || || | | || |||||||| | |||||| | |||||||| ||||| || Sbjct 2149 TCCAGATCGCACTGTTGCGCGACCATATGCACCAGCAGCGCATAGCTGGCGATGTTAAAC 2208 Query 145807 GGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCC 145866 |||| |||||| ||||| | || |||||||| ||||| ||||||||| || || Sbjct 2209 GGCAGCCCCAGGAAAATGTCGCAGGAACGCTGGTAAAGCTGACAGGAGAGCCTGCCATCC 2268 Query 145867 GCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || |||||||||||| | | | ||||| || | ||| ||||| Sbjct 2269 GCGACGTAGAACTGGAAAAAGGCATGGCACGGAGCCAGCGCCAT 2312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589115712412000