Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001697.1 Length=32355 Score E Sequences producing significant alignments: (Bits) Value seq44536 116 8e-22 seq42620 105 1e-18 seq7403 105 1e-18 seq60962 104 5e-18 seq11212 96.9 7e-16 seq60586 89.7 1e-13 >seq44536 Length=546 Score = 116 bits (128), Expect = 8e-22 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 732 ACCGCACTTTCTAAATGCGAAGGGGCGAAGTGCGCATAACGCATCGTCATTTCGATAGTT 791 |||||| ||||||||| |||||| || || ||||| ||| ||||||| ||| | Sbjct 297 ACCGCATCTTCTAAATGATCAGGGGCAAAATGGGCATATATCATTGTCATTTTTATA-TC 239 Query 792 GAA-TGTCCGAGAATTTCTTTCAATACCAAAATATTCCCACCGTTCATCATAAAATGGCT 850 || || |||||||| || ||| |||||||| || ||||| |||||||| |||||||| Sbjct 238 GACGTGACCGAGAATGTCGCGCAAAACCAAAATGTTTCCACCATTCATCATGAAATGGCT 179 Query 851 GGCGAATGTATGGCGCAAAACGTGGGTAAGTTGCCC 886 ||| |||||||| | || |||||| ||| |||||| Sbjct 178 GGCAAATGTATGTCTCAGAACGTGAGTACATTGCCC 143 >seq42620 Length=558 Score = 105 bits (116), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 |||||||||||| ||||||||||||| ||||||| | ||||||| | ||||||||||| Sbjct 516 TGGTGGGTCGTGTAGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCG 457 Query 416 ACTGAGCTAACGACCCAA 433 |||||||||||||||||| Sbjct 456 ACTGAGCTAACGACCCAA 439 >seq7403 Length=2901 Score = 105 bits (116), Expect = 1e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 |||||||||||| ||||||||||||| ||||||| | ||||||| | ||||||||||| Sbjct 1169 TGGTGGGTCGTGTAGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCG 1110 Query 416 ACTGAGCTAACGACCCAATTA 436 |||||||||||||||||| || Sbjct 1109 ACTGAGCTAACGACCCAAATA 1089 >seq60962 Length=2270 Score = 104 bits (114), Expect = 5e-18 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 717 AGCGGGTTGAATTTGACCGCACTTTCTAAATGCGAAGGGGCGAAGTGCGCATAACGCATC 776 || || || | ||| || ||| |||||||| || || || ||||| |||||||| Sbjct 2128 AGTGGATTAAGTTTTACAGCATCCTCTAAATGTTCGGGCGCAAAATGCGCGTAACGCATT 2069 Query 777 GTCATTTCGATAGTTGAATGTCCGAGAATTTCTTTCAATACCAAAATATTCCCACCGTTC 836 ||||||| || | || || || | | ||| || |||||||| || |||||| Sbjct 2068 GTCATTTTAATGTCGGTGTGGCCAAGCACGCGCTGCAAAACTAAAATATTTCCGCCGTTC 2009 Query 837 ATCATAAAATGGCTGGCGAATGTATGGCGCAAAACGTGGGTAAGTTGCCCTTTCGGCAAT 896 |||||||| || || || || ||||||||||||||||| || | || ||| |||||| Sbjct 2008 ATCATAAAGTGACTTGCAAAGGTATGGCGCAAAACGTGAGTTAACTGGCCTGCTGGCAAT 1949 Query 897 TCAATTTCGG 906 |||||| ||| Sbjct 1948 TCAATTCCGG 1939 >seq11212 Length=2167 Score = 96.9 bits (106), Expect = 7e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 |||||||||||| |||||||||||| ||||||| | ||||||| | ||||||||||| Sbjct 408 TGGTGGGTCGTGTGGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCG 349 Query 416 ACTGAGCTAACGACCC 431 |||||||||||||||| Sbjct 348 ACTGAGCTAACGACCC 333 >seq60586 Length=262 Score = 89.7 bits (98), Expect = 1e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 795 TGTCCGAGAATTTCTTTCAATACCAAAATATTCCCACCGTTCATCATAAAATGGCTGGCG 854 || |||||||| || ||| |||||||| || ||||| |||||||| ||||||||||| Sbjct 251 TGACCGAGAATGTCGCGCAAAACCAAAATGTTTCCACCATTCATCATGAAATGGCTGGCA 192 Query 855 AATGTATGGCGCAAAACGTGGGTAAGTTGCCC 886 |||||||| | || |||||| ||| |||||| Sbjct 191 AATGTATGTCTCAGAACGTGAGTACATTGCCC 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103254385606200