Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq60335 152 2e-32 seq57448 125 2e-24 seq30007 109 2e-19 seq38429 93.3 1e-14 seq43828 91.5 4e-14 seq43257 89.7 2e-13 seq87439 84.2 6e-12 >seq60335 Length=1976 Score = 152 bits (168), Expect = 2e-32 Identities = 255/367 (69%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 41429 GCAGATTCTCTGCAATTCATAAAAACCATCCCTGATAATTCCGTAAACCTGATCGCGACA 41488 || ||||| ||||||||||| |||||| | || || | ||| || |||||||||| || Sbjct 907 GCTGATTCACTGCAATTCATCAAAACCCTTCCAGACAGTTCTGTTGACCTGATCGCCACC 848 Query 41489 GACCCGCCCTATTTTGGCGTTAAGTCGAACGACTGGGACAACCAGTGGGAAAGTGACGCG 41548 ||||| || ||||| | ||||| || | ||||| || |||||| | ||||| | Sbjct 847 GACCCACCTTATTTCCGTGTTAAAGCGTGTAAATGGGATAATCAGTGGAAGAGTGAGGAA 788 Query 41549 GACT--TTTTGGGCTGGCTTGATGAGTTTCTGGCGGAGTTCTGGAGGATACTGGCCCCAA 41606 | | ||| | |||||| ||||| |||| | ||||||||| || |||| || Sbjct 787 CATTACCTTTCG--TGGCTTTATGAGCTTCTTTCAGAGTTCTGGCGGGTACTTAAACCGT 730 Query 41607 ATGGAAGCCTGTATATGTTTTCCGGTTCGCGGCTTGCGGCAAAAGTTGAATTACTTACCC 41666 || || || |||||||||| |||||| || || || || | |||||||| | Sbjct 729 CAGGCAGTCTTTATATGTTTTGCGGTTCCCGCCTGGCAGCTGACACCGAATTACTGGTTC 670 Query 41667 GCGACCGTTTCAATGTTTTGAACCACATCACCTGGGCTAAACCGAGCGGTGTATGGCGGC 41726 || | || ||| |||| |||| || || ||||| ||||| || |||| | Sbjct 669 GCAATCGGTTCGATGTGTTGAGTCATATTGTGTGGGCCAAACCACATGGCCCATGGATGA 610 Query 41727 GGCAAAATAAAGAGAGCCTGCGAGCATTCTTCCCGGCAACCGAGCGCATCATATTCGCTG 41786 ||||||| |||||||| |||| || || ||||| || || || || || || || |||| Sbjct 609 GGCAAAACAAAGAGAGTTTGCGGGCTTTTTTCCCTGCGACGGAACGAATAATTTTTGCTG 550 Query 41787 AACATTA 41793 ||||| Sbjct 549 CGCATTA 543 >seq57448 Length=845 Score = 125 bits (138), Expect = 2e-24 Identities = 307/459 (67%), Gaps = 15/459 (3%) Strand=Plus/Plus Query 15981 GAGGTCATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGAATTCGAC 16040 ||||| || ||| ||| ||||| ||||| |||||||||||||| || || || | ||| Sbjct 243 GAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAGAC 302 Query 16041 TCAAGCCAGTTTAACGGCTCTATC-CCGCAAATATCCTGCGAACCGCGAGGGCGTGTTAT 16099 | || |||||||| || || | || |||| ||||| |||| ||| | | Sbjct 303 GCCAGTCAGTTTAATGG-TCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTGGT 361 Query 16100 CCGCGTACCGGATACTTACGACCCAGAAACCCGCACTTATAACGGCACCTGGCTGGGGAC 16159 ||||| || || || ||||| | || |||| |||||||| | |||| ||| Sbjct 362 GCGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGTGA 421 Query 16160 GTTTAAATGGGCATGGACTGATAATCCGGCCTGGATTTTTTACGATCTGGTGGTGAGTGA 16219 || |||| || | || | || || || |||||||||||||||||||| || || Sbjct 422 TTTCAAATACGCCTATACCAACAA-CCCGCATGGATTTTTTACGATCTGGTTCTG---GA 477 Query 16220 C-CGCTTTGGCCTTGGCGACCGCCTGACG--GCAGCAAATATTGATAAATGGACGCTTTA 16276 | | ||| | | || | | || || ||| | | |||||||| ||| || || Sbjct 478 CAAGATTTATGGTATGGGAACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTATA 537 Query 16277 CCAGGTTGCACAATATTGCGATCAGCCGGTACCAGACGGAAAAGGCGGTTCCGGCACCGA 16336 | |||| || ||||| |||||||| || || | || ||||||| ||||| Sbjct 538 CGCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGGCGGT------ACCGA 591 Query 16337 GCCTCGCTATACCTGTAACGTGTATGTGCAGGAGAGGAATGACGCTTATACCGTTTTGCG 16396 ||| || | |||||| ||||| | | ||| | | | ||||| || |||||| | Sbjct 592 GCCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTCAA 651 Query 16397 TGATTTTGCGGCCATATTCCGTGGCATGACGTACTGGGG 16435 || |||| ||||| |||||||| || || | |||||| Sbjct 652 GGACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq30007 Length=31646 Score = 109 bits (120), Expect = 2e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 45340 CTGGAGAGATATTGACTGGCTCTTCTGCCAGGATGGAAAGTGGAGGCCAGTTGAACCCTC 45399 |||| |||| |||||||||| |||| ||||||||||| |||||||||||||| Sbjct 3236 CTGGTCAGATGCTGACTGGCTCGGATGCCGGGATGGAAAGTTACGGCCAGTTGAACCCGG 3295 Query 45400 ATCATTCCCGCTGGCTGATGGGATTGCCGGTCGAGTGGGCCAGTTGCGCGCCTACGGGAA 45459 |||||||||||||| |||||||| ||| ||||||| | ||||||| || || || Sbjct 3296 CACATTCCCGCTGGCTCATGGGATTCCCGCCAGAGTGGGACGATTGCGCGGTTATGGCAA 3355 Query 45460 CGCGATAGTCGCTCCATTAGCGGCAGCATTCAT 45492 || || ||| | | | | || |||| |||||| Sbjct 3356 TGCCATCGTCCCGCAAGTCGCCGCAGAATTCAT 3388 >seq38429 Length=1166 Score = 93.3 bits (102), Expect = 1e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 45357 GGCTCTTCTGCCAGGATGGAAAGTGGAGGCCAGTTGAACCCTCATCATTCCCGCTGGCTG 45416 ||||| ||||| ||||||||||| ||||||||||| || |||||||| ||||| Sbjct 1 GGCTCGGCTGCCGGGATGGAAAGTTCCGGCCAGTTGAATCCGGCACATTCCCGTTGGCTC 60 Query 45417 ATGGGATTGCCGGTCGAGTGGGCCAGTTGCGCGCCTACGGGAACGCGATAGTCGCTCCAT 45476 |||||||| ||| ||||||| | |||||| ||||| || || || ||| | | | Sbjct 61 ATGGGATTCCCGCCAGAGTGGGACGACTGCGCGGTTACGGCAATGCCATCGTCCCGCAAG 120 Query 45477 TAGCGGCAGCATTCATCAC 45495 | || |||| |||||| || Sbjct 121 TTGCCGCAGAATTCATAAC 139 >seq43828 Length=1516 Score = 91.5 bits (100), Expect = 4e-14 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 38271 TATCTCGTCAGGCA-TACATCCAGCGTTAGCAAAACAACCCTAGAGCAATACGTCACCGT 38329 ||||| ||| ||| |||| ||| |||| | |||||||| || |||||| ||| || | Sbjct 306 TATCTGATCAAGCACTACAGCCA-CGTTTGGAAAACAACGCTGGAGCAAAGCGTAACAAT 248 Query 38330 TGAGCGCGACCGTTATGGAGCATTCAAGCCTGTTGTCGCATTGGACGATTTTCCCAGCGG 38389 || ||||| ||| || || ||||| | || | || || ||||| || Sbjct 247 CGAACGCGATGCTTACGGCAGGTTTAAGCCGAGCATATCACTTGATGACTTTCCTGAAGG 188 Query 38390 ACTAAGCGACAGGGAATCAATGTTGAAACTGGCGGACTGGCTGCATCGCCTTGGCGTAGC 38449 | | || | || || ||| |||||||||| ||||||||||||||||| ||||| | Sbjct 187 TTTGGGTGAGCGTGAGTCGATGCTGAAACTGGCTGACTGGCTGCATCGCCTGGGCGTTTC 128 Query 38450 GATTGAAGATGAATGGAGTAACCCATGAT 38478 |||||||| | ||||| || ||||||| Sbjct 127 CATTGAAGACCACTGGAGCAAGCCATGAT 99 >seq43257 Length=1618 Score = 89.7 bits (98), Expect = 2e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 43191 GTTCCTCTGACCGAACCGCAGAAAGCCGGTATCGCATCTTTCTGCCCGTACAACATAGGC 43250 ||||| ||||||||||||||||| | || || || || ||||| |||| ||||| ||| Sbjct 850 GTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCGTCATTCTGTCCGTGGAACATTGGC 791 Query 43251 CCAGGCAAATGCTTCCCATCGACGTTCTATAAGCGTCTTAATGCTGGCGACCGCCACGGG 43310 || || |||||| | ||||| |||||||| | || || || ||||| |||| || Sbjct 790 CCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAACTAAACGCAGGCGATCGCCTGGGT 731 Query 43311 GCTTGTG 43317 || |||| Sbjct 730 GCATGTG 724 >seq87439 Length=491 Score = 84.2 bits (92), Expect = 6e-12 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 40232 GGCGTCTTTTGCGTCTTCTTAACAAATGCATGTAGCAGATAAATTTCGTTACCTACCGCG 40291 ||||| | || || ||||| ||||| || || || |||||||||| | | | || Sbjct 394 GGCGTGGTCTGTGTTTTCTTCACAAAGGCGTGCAGAAGATAAATTTTCTGGTCCTTCTCG 335 Query 40292 TAAGCGTACAGCGTTCTCGCTATGTTTTTATCCCCTACCCTTAGTTCGAAAAGGCCACCA 40351 ||| ||| |||||||||||||||| | || |||| || || || || || || Sbjct 334 TAACAGTAGAGCGTTCTCGCTATGTCCGCCCCGCCAACCCGCAGCTCAAACAGCCCGCCG 275 Query 40352 CCGATAACGCGGCTATGAGGCATTTTCAGCTTGTTCCCTTCACTTTCCAGTCTCTCGATC 40411 || || || ||| || |||| ||||| | |||||| ||||||| | ||| ||| Sbjct 274 CCTATCACCTTGCTGTGCGGCA-TTTCAAC---CGCCCTTCCGTTTCCAGCCGCTCAATC 219 Query 40412 AGCCGGGTCATGCGACCGCGTAGCTCATCAGGTAATTCTTTAAGCTC 40458 |||||| ||| ||||||| || ||| || | ||| | ||||| Sbjct 218 AGCCGGAACATCTGACCGCGCAGGCGATCGGGCAGTTCCTCCAGCTC 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148048966978200