Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq51865 188 7e-43 seq95708 141 1e-28 seq41695 123 3e-23 seq29103 105 7e-18 seq108015 102 8e-17 seq2641 84.2 2e-11 >seq51865 Length=821 Score = 188 bits (208), Expect = 7e-43 Identities = 319/454 (70%), Gaps = 15/454 (3%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGG-CAGAGAGGCCGCCTTCGGCGAGCGCCT 117042 ||||| || ||||| ||||| |||||| |||| || | | || |||| | | | || || Sbjct 369 AAGGCTGACTGGGCCCTGCGGTGGATCTCCGGACAAAAACTCCACCTTTGCCAACCGTCT 428 Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 ||| || ||||| || || || || ||||||| ||| ||||||| |||| || || Sbjct 429 GGTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTG 488 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 ||||||||| || ||||||||||||||||| || || ||||||||||||||| | || Sbjct 489 GCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCGCGTGA 548 Query 117163 CGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222 ||| || |||| |||||||||||| |||| ||| || | || | |||| Sbjct 549 CGAAGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCGCTCCT----CAACAACCGCC 604 Query 117223 C-----GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTC 117277 | | ||| ||| | ||| ||||||| || |||| |||||| || ||| Sbjct 605 CCTCCAAAGACGC-CGTGCAAGCCATCATCACCGAGGCCGTCGAGATCGAGAAGGAGTTC 663 Query 117278 CTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAAT 117335 || |||| || ||||| ||||| ||||| || | || || | | |||| || | Sbjct 664 CTGTCCGACGCCCTGCCTTGTGCG-CTGCTCGGCATGAA-CGCCACCCTCATGTGCCAGT 721 Query 117336 ACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACA 117395 |||| ||||| ||||||||| ||||||||||| || | | | | | | ||||| || Sbjct 722 ACATTGAGTTTGTCGCCGACCGGCTGCTGCTCTCCCTCGGCAACACGAGGTACTACCACG 781 Query 117396 CGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 | ||||||| | ||||||||| | |||||| Sbjct 782 CCACCAACCCTTTTGACTTTATGGAGAACATCTC 815 Score = 172 bits (190), Expect = 6e-38 Identities = 184/241 (76%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGA 116736 ||||||| | || || ||||||||| ||||||| | || | |||||| |||| Sbjct 6 CGAGGAGATTGATCTCTCCAAGGACCTCCACGACTGGAACAAACGACT-AACGACGACGA 64 Query 116737 GCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGA 116796 |||| |||||| ||||| || ||||| || |||||| ||||||||||||||||| Sbjct 65 GCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCGTCAACGA 124 Query 116797 GAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856 ||| |||||||||| ||| || ||||| || | | |||||||| ||||||||||| Sbjct 125 GAACTTGGTCGAGCGCTTCTCTAGCGAGGTACAAATCCCAGAGGCGCGCTGCTTCTACGG 184 Query 116857 CTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||| |||||| ||||||||||| |||||||| | ||| ||| ||||||||||| || Sbjct 185 CTTCCAGATCATGATGGAGAACGTCCACTCGGAGACGTACTCGTTGCTCATCGACACCTA 244 Query 116917 C 116917 | Sbjct 245 C 245 >seq95708 Length=954 Score = 141 bits (156), Expect = 1e-28 Identities = 189/258 (73%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||| ||| | || || Sbjct 347 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGAC-GCCGAAGAGATTGATCTC 289 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || | ||| ||| | || |||||||| ||||| | |||||| Sbjct 288 TCCAAAGATCTGCACGATTGGAACAACCGTCTGAACGACGACGAGAAATACTTCATCTCC 229 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || || ||||| ||| |||||||| ||||||||||| |||| |||||| Sbjct 228 CACATCCTCGCATTCTTCGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCGT 169 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | ||||| || ||| | || || || ||||| ||||| || |||||| || Sbjct 168 TTCAGCGGA-GAGGTCCAAGTGCCAGAAGCTCGTTGCTTTTACGGATTCCAGATCATGAT 110 Query 116872 GGAGAACGTGCACTCGGA 116889 ||| ||| | |||||||| Sbjct 109 GGAAAACATCCACTCGGA 92 >seq41695 Length=397 Score = 123 bits (136), Expect = 3e-23 Identities = 179/250 (72%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 || |||| |||||||| ||||| |||||||| | | |||||||||||||| ||||||| Sbjct 352 TGCTGAATGCCATCGATACGATCCCGTGCGTTCAGAAAAAGGCCGAGTGGGCTCTGCGCT 293 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | | | | | |||| |||||| ||| | || || |||| ||| |||| Sbjct 292 -GATCG-----ATA-ACGGTTCATTCGCCGAGCGGCTGATTGCGTTTGCGGTCGTTGAGG 240 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | | ||||| ||||| ||| | | || | ||||| |||||||| || | |||| Sbjct 239 GGATTTTCTTCTCGGGATCGTTCTGCTCGATCTACTGGCTGAAGAAACGGGGTATGATGC 180 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | ||||| | ||| || ||||| ||||| | || || || ||||| |||| || | Sbjct 179 CGGGCCTTTCCTTCTCGAATGAGCTTATCTCGCGCGATGAAGGGCTGCACCGCGATTTCG 120 Query 117186 CCTGTTTGCT 117195 ||||| |||| Sbjct 119 CCTGTATGCT 110 >seq29103 Length=1863 Score = 105 bits (116), Expect = 7e-18 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 1278 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 1219 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 1218 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 1159 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || ||||| || |||| ||||| || ||||||||||| || ||| Sbjct 1158 ATCTTGCCGG--AAGCAGCTTGAGGACGGCCGCACTCTTGCAGACTACAACATTCAAAAG 1101 Query 40879 GAGGCCACGC 40888 ||| | |||| Sbjct 1100 GAGTCGACGC 1091 >seq108015 Length=311 Score = 102 bits (112), Expect = 8e-17 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 116720 CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGC 116779 ||||||| || | |||||| | |||||| || | || ||||| || |||||| | Sbjct 282 CGCTTGACCGCCGACGAGCAGTACTTCATCTCTCATATTCTCGCCTTCTTTGCCGCCTCC 223 Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC-GCTCAGGAGGTGCAGGTGGCCGA 116838 || || |||||||||||||| ||||| || |||||| || | |||||| || | | || Sbjct 222 GATGGTATCGTCAACGAGAACCTGGTTGAACGTTTCAGCGC-GGAGGTTCAAATTCCTGA 164 Query 116839 GGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 ||| || ||||| || ||||| |||||| |||||||| | || || |||| Sbjct 163 GGCTCGCTGCTTTTATGGCTTCCAGATCATGATGGAGAATATTCATTCTGAAA 111 >seq2641 Length=263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 40775 AAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAAC 40834 |||||| ||||| ||||| || ||| | || || ||||||||||||| || || || | Sbjct 105 AAATTCAAGACAAGGAGGGTATTCCCCCCGATCAACAACGACTCATCTTTGCTGGTAAGC 164 Query 40835 AGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATC 40894 || |||| || | || ||||| ||| |||||||| ||||| || | || ||||||| Sbjct 165 AGTTGGAAGATGGTCGAACCCTTGCCGATTACAACATTCAGAAAGAATCTACTCTGCATC 224 Query 40895 TAGT 40898 | || Sbjct 225 TGGT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514380036728000