Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq84058 410 3e-110 seq93587 370 3e-98 seq49821 286 9e-73 seq74580 159 9e-35 seq57448 127 5e-25 seq83242 104 6e-18 >seq84058 Length=491 Score = 410 bits (454), Expect = 3e-110 Identities = 390/493 (79%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 4695 TGCTGAACGGCGACGGTACCGGGGAT-AACCTGGAAGGGCTGAACAAAGTGGCAACCGCC 4753 |||||||||| ||||| | || || ||||| ||||| || ||| ||||| || | Sbjct 490 TGCTGAACGGAGACGGCAAAGGCGACGAACCTTGAAGGTCT-AACGCGGTGGCCACACCG 432 Query 4754 TATGACACCTCGTTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCACGCTATT 4813 |||||| | || |||||||| |||| || || || |||||||| || ||||| || || Sbjct 431 TATGACGCTTCTCTGAATGCCTCCGGGGATACGCGTGCTGACATCATTGCTCATGCGATC 372 Query 4814 TATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAACCCGCGCGACTGG 4873 || ||||| || |||||||| |||||||| |||||||| |||| || || ||||||||| Sbjct 371 TACCAGGTCACTGAGTCTGAATTCAGCGCGTCCGGTATTATCCTTAATCCTCGCGACTGG 312 Query 4874 CACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCA 4933 |||| |||||| |||| |||||| ||| || || |||||||| || ||||| ||||| Sbjct 311 CACAGCATCGCACTGCTTAAAGACCGTGATGGTCGTTATATCTTTGGCGGTCCGCAGGCG 252 Query 4934 TTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCGCAGGCCGCCGGC 4993 |||||||| |||| |||||||||| |||| || || || || | |||||| |||| Sbjct 251 TTCACCAGCAACAACATGTGGGGCCTGCCTGTTGTGCCTACGCGTTCACAGGCCAGCGGC 192 Query 4994 ACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGCATGGATGCCACC 5053 || ||||| || || ||||| || |||||||| ||||||||||| ||||||||||| || Sbjct 191 ACATTTACTGTTGGTGGTTTTGACATGGCCTCTCAGGTCTGGGACCGCATGGATGCAACG 132 Query 5054 GTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTGACCATCCTGTGC 5113 || || || ||||| |||||||| || ||||| || ||||| |||||||| |||||||| Sbjct 131 GTTGAGGTCAGCCGCGAAGACCGGGACAACTTTGTCAAAAA-ATGCTGACAATCCTGTGT 73 Query 5114 GAAGAGCGTCTGGCGCTGGCACATTATCGCCCGACAGCAATCATCAAGGGCACCTTCTCT 5173 || |||||||| || ||||| || |||||||| |||||||||||||| ||| | || || Sbjct 72 GAGGAGCGTCTTGCTCTGGCTCACTATCGCCCTACAGCAATCATCAA-GGCTCTTTTGCT 14 Query 5174 TCTGGCTCATGAT 5186 || ||||| |||| Sbjct 13 TCAGGCTCCTGAT 1 >seq93587 Length=445 Score = 370 bits (410), Expect = 3e-98 Identities = 341/430 (79%), Gaps = 1/430 (0%) Strand=Plus/Minus Query 1880 GTGAATGCGGTGGTGGTGAAAGATGCTGCTGGCAACCGCAAGCTCGATAAATCCAAAGCA 1939 || ||||| ||| | || ||||| || || |||||| | ||||| || |||||||||||| Sbjct 445 GTTAATGCCGTGATCGTCAAAGACGCAGCGGGCAACAGAAAGCTGGACAAATCCAAAGCA 386 Query 1940 ACGGGCCGTATTGATGGCATGGTCGCAATGACAATGTCCGTTGGTGCTGCTAATGGGGAA 1999 || ||||| ||||| || |||||||||||||| ||||| |||| || ||||| ||||| Sbjct 385 ACAGGCCGCATTGACGGTATGGTCGCAATGACCATGTCTATTGGCGCGGCTAACGGGGAG 326 Query 2000 GTTACCGAACAGGGTGGTGACTTCGACGACTTCATTTTCCGACCGCTGAGCATGTGATGG 2059 || || |||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 325 GTCACTTTGCAGGGTGGTGACTTTGAAGACTTCATTTTCAGACCGCTGAGCATGTGATGG 266 Query 2060 AAGAACCTAAATACACGATTGACCTGCGAACCAATAACGGCTGGTGGGCAAGGCTGCAGT 2119 ||||||| |||| || ||||| || || ||||||||||| |||||||| ||| |||| Sbjct 265 AAGAACC-GAATATACAATTGATCTACGGACCAATAACGGTCTGTGGGCAAAGCTTCAGT 207 Query 2120 CCTGGTTTGTCGGCGGGCGTTTAGTCACCCCAAATCAGGGCTCACAGACGGGGCCTGTTT 2179 | ||||| ||||||||||| ||||| || || ||||||||||| ||| | || || || | Sbjct 206 CATGGTTCGTCGGCGGGCGCTTAGTTACGCCTAATCAGGGCTCGCAGTCCGGTCCGGTGT 147 Query 2180 CGGCCCACGGACACCTGGGCGATTCATCCATTAACGATGAACGGATACTGCAAATTTCGA 2239 | || ||| ||||| ||||| || | | ||||| ||||| || | || || |||| Sbjct 146 CTGCATCCGGGCACCTTGGCGACTCCGCAGTCAACGACGAACGAATTTTACAGATATCGA 87 Query 2240 CTGTGTGGCGCTGCGTGAGCCTGATTTCAACGCTCACGGCATGCTTACCGCTTGATGTCT 2299 | || ||||| || ||||| |||||||||||||| || |||| | || |||||||| | Sbjct 86 CGGTCTGGCGTTGTGTGAGTCTGATTTCAACGCTGACATCATGTCTGCCACTTGATGTGT 27 Query 2300 TCGAAACAGA 2309 |||| || || Sbjct 26 TCGAGACGGA 17 >seq49821 Length=2150 Score = 286 bits (316), Expect = 9e-73 Identities = 463/655 (71%), Gaps = 16/655 (2%) Strand=Plus/Minus Query 25288 TGCCATTAAGCAGCCGCTCCTTCTAATTCG--TCTCGTCTGATGTTGTAAACGTCCTGCG 25345 |||||||| || | |||||||| | || | || || |||| || || |||| || Sbjct 1986 TGCCATTATGCGGTAGCTCCTTCAAGCTCTGATTTCTTC--ATGTCATAGACTTCCTTCG 1929 Query 25346 CTTTGTGCTGCTCCGGTGTTCCTTCGAGCATCTTCCACGCTTTGGCGAACGCCTGTTTAA 25405 |||| ||||||||| ||||| || ||||||| ||| |||||||| || | ||| || | Sbjct 1928 CTTTAGCCTGCTCCGGAGTTCCGTCAAGCATCTGCCATGCTTTGGCAAATGACTGCTTGA 1869 Query 25406 GCTCTTCCACGGTGtttttttGCATTGCTGCGTCAGTGAATGCTTTTAGAACCTGTTCAG 25465 | ||||| || | || | | || || |||| ||| || |||| | | | Sbjct 1868 GATCTTCAGGATTGGTCTTATTAAGCGCAGCCTCAGAGAAGGCAGCGAGAATGTCGGCGG 1809 Query 25466 GTGTAGGTGATGGGTTTGATTGCTTTGCTG---CTGCGTTCTGCTGATGTTTATGTTCGT 25522 || | ||| ||| || | | || ||| | ||| ||||||| || ||| |||| Sbjct 1808 GTTTTGGTTTTGGCTT-GCT--CTGTGCGGGCGCTGATGTCTGCTGCTGGCGATGCTCGT 1752 Query 25523 CGGTATCTGCATCTTTCGCATCATCAATGCCGAACAAACCATTGAGGCAATACTTGCGTG 25582 ||| || ||||| || | ||||||||||| ||||| || || ||||| |||||||| | Sbjct 1751 TGGTGTCCGCATCCTTTGAGTCATCAATGCCAAACAATCCGTTAAGGCAGTACTTGCGGG 1692 Query 25583 CATAAGAGCTTGTAGCTCCAGTAACTTGTGCAGAATCCATTCCTTTCTTGCTTTCTTCCT 25642 |||| || || || || || ||||| ||||||| ||||| ||||| ||| ||||||| Sbjct 1691 CATATGAACTGGTTGCGCCTGTAACCTGTGCAGCGTCCATGCCTTTTTTG-ACTCTTCCT 1633 Query 25643 CTCGTGCAAGGGCGGTTGCTGTATGACTGTTTTCGCCATCAGTAATAGTTGCTGTTGCTT 25702 | || || | || || || ||| | | ||||||||||| || | ||| ||||| Sbjct 1632 CACGCGCCATTGCTGTAGCGACGTGAGTTGTCTCGCCATCAGTTATTGATGCAGTTGCCC 1573 Query 25703 TCACGTAATACCGATCACCAATCAACACAACTTCATCGCTGATTGATAAAAACAGGCCAT 25762 ||||||||| |||||||| | || | ||||| ||||| | |||||| || | Sbjct 1572 GCACGTAATAGCGATCACCTACTGGAACTATCTCATCAGAAATTGAAAGAAACAGTCCGT 1513 Query 25763 TCAGTAACGGCTTAACACCCTCAAGAATGTCTTCGCAGCTTCTGTATTTATATTTACCGA 25822 | || | ||||| || ||||||||||||||||| ||||| | ||||| || || ||| Sbjct 1512 TGAGGAGTGGCTTTACTCCCTCAAGAATGTCTTCACAGCTGCGATATTTGTACTTGCCG- 1454 Query 25823 ATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTG-AATGGCTGCCAGTCTTGCG 25881 | ||||||||||||||||||||| ||||| || ||| | | | || |||| ||| Sbjct 1453 AGCTGTTGTACTGATTCTTTGGCGCATTCAGCGTCCGCTGTATTCTCAGCGAGTCGTGCA 1394 Query 25882 TAAAATT-CTTTGCTCATATGTTTGTTCTCAGAATGGACATGGCCCAAGGAAATA 25935 || |||| |||||||| | | ||||||| || |||||||| |||||||| Sbjct 1393 TAGAATTCCTTTGCTC--ACTTACCACCTCAGAACGGGCATGGCCCGAGGAAATA 1341 >seq74580 Length=467 Score = 159 bits (176), Expect = 9e-35 Identities = 127/150 (85%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 27401 CAGCACAGTCGTGATGGCAAGGTCAGAATAGCGCTGAGGTCTGCCTCGTGAAGAAGGTGT 27460 ||| ||||||||||| | ||||||||||||| |||||| || ||||| |||||||| Sbjct 467 CAGGACAGTCGTGATAACGAGGTCAGAATAGCACTGAGGGTACCCACGTGATGAAGGTGT 408 Query 27461 TGCTGACTCATACCAGGCCTGAATAGCTTCATCATCCAGCCAGAAAGTTATGGAGCCACG 27520 ||||||||||||| ||||| ||||| | ||||||||||||| |||||| |||||||| | Sbjct 407 TGCTGACTCATACTAGGCC-GAATAACCTCATCATCCAGCCTGAAAGTCATGGAGCC-CT 350 Query 27521 GTTGATGAGGGCTTTATTGTAGGTGGGCCA 27550 |||||| || ||||| ||||||||| |||| Sbjct 349 GTTGATAAGCGCTTTGTTGTAGGTGAGCCA 320 >seq57448 Length=845 Score = 127 bits (140), Expect = 5e-25 Identities = 315/473 (67%), Gaps = 15/473 (3%) Strand=Plus/Plus Query 14774 CTGAGGTGATTGACGCCAAGTTACGATATCCAAACACAGCGCTACTCTACATCGAATTCG 14833 |||||||||| ||| |||| | || ||||| || || ||||| ||||| || || | | Sbjct 241 CTGAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAG 300 Query 14834 ATTCAAGTCAGTTTAACGGCTCTATC-CCGCAGATCTCCTGCGAGCCCCGCGGCCGTGTT 14892 | | ||||||||||| || || | || | || ||||| | || || | Sbjct 301 ACGCCAGTCAGTTTAATGG-TCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTG 359 Query 14893 ATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGT 14952 | ||||| || ||||| ||||| | || |||| |||| |||| ||||| ||| Sbjct 360 GTGCGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGT 419 Query 14953 GCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGATCTGGTTGTTTCT 15012 | || || | || | || | ||||| || ||||||||||||||||||||| | Sbjct 420 GATTTCAAATACGCCTATACCAACAACCC-GCATGGATTTTTTACGATCTGGTTCTG--- 475 Query 15013 GACCGGTTC---GGCCTCGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACGCTT 15069 ||| | | || | || |||| | || | | |||||||| ||| || Sbjct 476 GACAAGATTTATGGTATGGGAACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTA 535 Query 15070 TATCAGGTTGCCCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACC 15129 || |||||||||||||||||||| || || | ||| ||| ||||||| Sbjct 536 TACGCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGG------CGGTACC 589 Query 15130 GAACCACGTTATACCTGCAACGTGTACATCCAGGACCGAAACGACGCTTATACAGTCCTG 15189 || ||||| | |||||||||||| | ||| ||| ||| | ||||| || || || || Sbjct 590 GAGCCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTC 649 Query 15190 CGTGATTTTGCGGCCATATTCCGTGGCATGACGTACTGGGGAGGCGATCAGAT 15242 || |||| ||||| |||||||| || || | ||||||| ||||||| Sbjct 650 AAGGACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGGAAATAATCAGAT 702 >seq83242 Length=311 Score = 104 bits (114), Expect = 6e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3762 CTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATG 3821 ||| ||||||||||| ||||||| | || |||||||| || || | | || | | Sbjct 222 CTGAGCGAAATCAGCATCTGCACCATGCCGGCCAACGAGCACGCCACCGTGGCCTCGCTC 163 Query 3822 AAAAGTGTCGATGGCATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTC 3881 || || | || ||||| |||| ||||| |||| |||| |||||||| | ||| ||| Sbjct 162 AAGAGCATGGACGGCATCGAAAGCATTCGCGATGCGGAGCACTGGCTGCGAGATGCAGCT 103 Query 3882 GGCCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGC 3941 |||||| |||| || |||| | | | || ||||| | ||||| || ||||||| Sbjct 102 GGCCTCTCCAAGTCCGAGGCGCAGGCGTTCATCGCCCGCATCAAGTCCGCAGTTCGGAGT 43 Query 3942 GAGTCCGAGGGC 3953 |||||||| ||| Sbjct 42 GAGTCCGAAGGC 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130080013651800