Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq28556 107 2e-18 seq29103 96.9 3e-15 seq2641 91.5 1e-13 >seq28556 Length=388 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| ||||||||||||||||| | || || ||| || Sbjct 74 ACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAGAGGGTACGGCCATCTTCC 133 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||||||||||||||| || ||||| ||||| || ||||| Sbjct 134 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGG 193 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| |||| ||| || || | || | || ||| Sbjct 194 ATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACTTCTAGCGTGATGGTCTTG 253 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || ||||| Sbjct 254 CCGGTGAGGGTCTTGACGAAGATTTGCAT 282 >seq29103 Length=1863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/202 (72%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATT-GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||||||| || ||||| |||||||||||||| || | |||||| ||||| Sbjct 1080 ACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTGCGGCCGTCCTC 1139 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 1140 AAGCTGCTT-CCGGCA-AGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 1197 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | | ||||||||| | ||| | || || Sbjct 1198 GATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTT 1257 Query 118709 GCCGGTCAGAGTTTTTACAAAA 118730 ||| ||||| || || || ||| Sbjct 1258 GCCCGTCAGGGTCTTCACGAAA 1279 >seq2641 Length=263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/175 (72%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| ||||||||||||||| | || || ||| || | ||| || ||| Sbjct 216 GTAGATTCTTTCTGAATGTTGTAATCGGCAAGGGTTCGACCATCTTCCAACTGCTTACCA 157 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| || || |||||||| || || |||||||||||| ||||| | ||| Sbjct 156 GCAAAGATGAGTCGTTGTTGATCGGGGGGAATACCCTCCTTGTCTTGAATTTGGT-TTTG 98 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | |||| || |||| || || || | ||| | || |||||||||| Sbjct 97 ACATTGTCGATAGTATCCGAAGATTCAACTTCAAGGGTGATAGTCTTGCCGGTCA 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433141463767600