Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_002214.1 Length=39807 Score E Sequences producing significant alignments: (Bits) Value seq115158 760 0.0 seq125381 320 4e-83 seq123790 316 5e-82 seq125025 199 1e-46 seq30831 91.5 4e-14 >seq115158 Length=1188 Score = 760 bits (842), Expect = 0.0 Identities = 664/819 (81%), Gaps = 10/819 (1%) Strand=Plus/Plus Query 25669 TTAATTTTAAATTGCGTTTACAAAACAAAGCTACTCTAGTAGCTCTCATTTCAGCAGTGT 25728 ||||||||||||| ||||| ||||| ||| |||| ||||||||||| || |||||||| | Sbjct 291 TTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTATCTCAGCAGTAT 350 Query 25729 TCCTTATGTTGCAACAGTTTGGGCTTCATGTCCCAAACAACATCCAAGAGGGTATTAATA 25788 |||||||||||||||| || |||||| | | ||| |||| |||||||| | | | |||| Sbjct 351 TCCTTATGTTGCAACAATTAGGGCTTGAAATTCCACACAATATCCAAGACGCTGTAAATA 410 Query 25789 CCCTTCTCGGAATCTTGGTTATTCTTGGAATTATTACCGACCCAACAACTAAGGGCATTG 25848 | | | | ||| |||||||| || ||||| ||||||||||||| |||||||| |||| Sbjct 411 CATTCATTGCAATTTTGGTTATCCTCGGAATCGTTACCGACCCAACCACTAAGGGGATTG 470 Query 25849 CTGATAGTGAGCGAGCTTTGAGTTATATTCAACCACTAGATGACAAGGAGGTATACTAAA 25908 | || || || ||||| ||||| ||| ||||||||||| || ||||| | | | || Sbjct 471 CAGACAGCGAACGAGCATTGAGCTATGAACAACCACTAGACGAAAAGGAAGGAAAATAGT 530 Query 25909 ATGAATG-TCCCACAATCTCTTGTTAATTGGTTTGTTAATCATCG---CAATCTGCTTAC 25964 |||| | | | ||||||| |||| |||||||||||||| ||||| ||| || || Sbjct 531 ATGAGCGATACAACAATCTATTGTAAATTGGTTTGTTAACCATCGAGGCAAATTG---AC 587 Query 25965 CTACTCGATGTATGGCTCACGTAATGGATCAGACGGAACAGCCGACTGCTCTGGTTCTAT 26024 ||| || |||||||| ||||| || ||| ||||||| ||||| |||||||||||||| || Sbjct 588 CTATTCAATGTATGGGTCACGCAACGGAGCAGACGGTACAGCTGACTGCTCTGGTTCCAT 647 Query 26025 GTCACAAGCCTTAAAAGAGGCAGGCATTCCTATCCAAGGGCTACCATCTACTGTGACACT 26084 ||||||||| ||||||| || || ||| ||| ||||| |||||||||||||| ||||| Sbjct 648 ATCACAAGCCCTAAAAGAAGCTGGTATTGGTATTCAAGGTCTACCATCTACTGTTACACT 707 Query 26085 TGGTCAACAACTTGCTAAAAATGGCTTCTATCGTATAAGTCGTAATGAAGACTGGAATGC 26144 |||||||||||||| |||||||| |||||||| ||||| |||| |||| ||| |||| Sbjct 708 AGGTCAACAACTTGCCAAAAATGGATTCTATCGAGTAAGTATTAATCAAGATTGGGATGC 767 Query 26145 TGAAACTGGTGATATCGTATTGATGTCGTGGGGCGCAGACATGGCTAGCTCTGGGGGAGC 26204 | || || ||||| || || ||||| ||||| | || ||| | | ||||| ||||| Sbjct 768 TTTGACAGGCGATATTGTGTTAATGTCATGGGGTTCTGATATGTCCACATCTGGCGGAGC 827 Query 26205 TGGTGGACACGTTGGTGTAATGATGGATAGCGTAAACTTTATTTGTTGTGACTACTCAAC 26264 ||| || ||||||||||| ||||||||| | |||||||| |||| || || ||||| Sbjct 828 TGGAGGGCACGTTGGTGTCATGATGGATGCTACATACTTTATTAGTTGCGATTATTCAAC 887 Query 26265 TCAAGGAGCAGCAGGGCAAGCTATCAATACGTATCCGTGGAATGATTACTATGAAGCTAA 26324 |||||| ||| | ||||||||||||||||| || ||||||||||| ||||||| ||| || Sbjct 888 TCAAGGGGCACCTGGGCAAGCTATCAATACTTACCCGTGGAATGACTACTATGCAGCGAA 947 Query 26325 TAAGCCTGCATATATCGAGGTTTGGCGCTATTCTGAATCAGCACCACAAACCAAAAACCA 26384 |||||||||||||||||||| ||||| |||||||| | ||||| |||||||| ||||| Sbjct 948 CAAGCCTGCATATATCGAGGTGTGGCGTTATTCTGACACTGCACCGCAAACCAACAACCA 1007 Query 26385 AGCGAATACAGCAG-TA-ACTCCACAACAAAAGGCTTACTATGAAGCCAATGAAGTCAAA 26442 ||| |||||||||| || || |||||||||||||||||||||||||| |||||||| || Sbjct 1008 AGCTAATACAGCAGCTAGACACCACAACAAAAGGCTTACTATGAAGCTAATGAAGTTCAA 1067 Query 26443 TACGTTAA-CGGCATTTGGCAGATTAAATGTGATTATTT 26480 | |||||| || ||||||||||| |||||||| ||||| Sbjct 1068 TTCGTTAATGGGAATTTGGCAGATCAAATGTGACTATTT 1106 >seq125381 Length=275 Score = 320 bits (354), Expect = 4e-83 Identities = 236/274 (86%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 39208 TTGATAATGTAGTTAAGGAGCGCTCGAAGTTGTCGCCTGTAACGCTGGAAGACATGCGTG 39267 ||||||| || ||||| ||||| ||||| | || ||| ||| |||| || ||| ||| Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAACTA-TCACCTTCAACATTGGACGATATGAGTG 215 Query 39268 AGTATCTTACGAACTGTCTAGTGAATGATTTACAAGAGCATTTGTTAGAGAACTATTCTG 39327 |||||||||||||| | ||||||||||| |||| |||| || || |||||||||||||| Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 39328 CCAGAAGTGGGTCATGTAAGCCAGATACTAATAAAACTAACGCTGGGCTGACTAAGGAAC 39387 |||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||| Sbjct 154 ACAGAAGTGGGTCATCTAAGCCAGATGCTGATAAAGCTAACGCTGGGCTGACTAAGGAAC 95 Query 39388 TTTTTCGAGAGTTTCGCAAGGAAATCGAAGTATTAAGAGCAGCACACCCTAACCGTAACG 39447 |||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 94 TTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACCGTAACG 35 Query 39448 CAGAGTACATTATGGAAGTAAAAGGATGTTCAAA 39481 |||| || |||||||||| |||||||| ||||| Sbjct 34 CAGAATATGTTATGGAAGTGAAAGGATGCTCAAA 1 >seq123790 Length=336 Score = 316 bits (350), Expect = 5e-82 Identities = 225/257 (88%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 39507 GCAATTAACACAGTATATACAGAAATTGGAATTCTAACACCTCGGAAGGTAATCCAATTA 39566 ||||||||||| ||||||||||||||||| | | |||||||||| ||||||||||||||| Sbjct 1 GCAATTAACACTGTATATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTA 60 Query 39567 GAAGGGCTTCTGTCTAGAGAGCTATTCGGAAAGATAGCTAAGTACGTCTTTAATAAGTAT 39626 || || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 61 GAGGGTCTTCTGTCTAGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTAT 120 Query 39627 GAGTGGCCTGAAAGCCTAGATAGCGAAGTTGATCGTATCTATTTAGAATATCGCACCAAA 39686 || ||||| |||||||||||| | ||||||| | |||||||||||||||||||| ||| Sbjct 121 GAATGGCCAGAAAGCCTAGAT-GAAGAGTTGATAGAATCTATTTAGAATATCGCACTAAA 179 Query 39687 GGTGATCTAGGTCTTGAAAAGGAAAGCGTTAAGCGTGTGCTATATAAAGCGATCTCTATG 39746 ||| ||||||||| ||| || ||||| ||||| || |||||||||||||| |||||| Sbjct 180 GGTAATCTAGGTCGTGATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATG 239 Query 39747 GGCTTGTAGTGGTTCGA 39763 ||||||| ||||||| Sbjct 240 GGCTTGTGAGGGTTCGA 256 >seq125025 Length=589 Score = 199 bits (220), Expect = 1e-46 Identities = 195/249 (78%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 22618 CCAGATATTAATGTTATACGATATGTAGGAGAAGAATAAATGGCTGAATTTTGGAGTAAT 22677 ||||| |||||| || |||| ||||||| | |||| |||||||||||||||||||| Sbjct 247 CCAGACCGTAATGTCATTAGATACGTAGGAGGTGCATAA-TGGCTGAATTTTGGAGTAAT 189 Query 22678 AACGATAGAGGTTATAGAATTAGGCTTTGGATTGATCAAGTAAGTCAAGACAAAGTAGCT 22737 | ||| | || ||| | || | |||||| | || || || ||||||| | | Sbjct 188 A-CGACCGTGGATATCGTATCCGTCTTTGGGTCGACCAGGTTGGTCAAGATATCCAAAAC 130 Query 22738 AATACGAGTCAGGTCAGATTTCAATTAGCATTATTAAATACAACAACTACTTTTGCTCAA 22797 ||||| ||||| || ||||| | |||||| ||| ||||||| |||||||| ||||||||| Sbjct 129 AATACAAGTCAAGTTAGATTGCGATTAGCGTTACTAAATACGACAACTACGTTTGCTCAA 70 Query 22798 TACTCATGTAACGCTTATATCGATTTTGAAGGACAACGATTGAATTGGTCTGGTTCACCT 22857 || ||||| |||||| |||| ||| | || ||||||||||||||||||||||||||| Sbjct 69 TATCAATGTAGTGCTTATGTCGAATTTAACGGTCAACGATTGAATTGGTCTGGTTCACCT 10 Query 22858 AGCGTTCTA 22866 ||||||||| Sbjct 9 AGCGTTCTA 1 >seq30831 Length=459 Score = 91.5 bits (100), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 21124 ATCGCCACTCCTTGGATGCCTAGTGCTTCCGAAGTAACAACCGACGACTTTCCAAAATAC 21183 ||||||||||| | ||||| ||| ||||| ||||| | |||| ||||| | | Sbjct 120 ATCGCCACTCCATACATGCCATCAGCTAGCGAAGCCACAACTGCTGACTATCCAAGTTTC 61 Query 21184 ATTGGTCAGTACACAAACTATAATCAAGTAGATAGTCCTAATCCTCAAGATTATACTTGG 21243 || || || |||||| ||| || ||||||||||||| |||||||| |||||| |||||| Sbjct 60 ATCGGACACTACACAGACTTTACACAAGTAGATAGTCTTAATCCTCGAGATTACACTTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127063887773400