Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_002519.1 Length=39898 Score E Sequences producing significant alignments: (Bits) Value seq35356 136 1e-27 seq72771 123 6e-24 seq28764 96.9 9e-16 >seq35356 Length=5999 Score = 136 bits (150), Expect = 1e-27 Identities = 331/495 (67%), Gaps = 31/495 (6%) Strand=Plus/Minus Query 2487 TCTTCCACGTTGGCTGGCGTGACCGCCCTGACAACCTCTACAGCATGGGGCCACTTGATA 2546 ||||||| || ||||||||| ||| |||||||||||| |||||||| || |||| Sbjct 5916 TCTTCCATGTAGGCTGGCGTTTCCGTACTGACAACCTCTGGGCTATGGGGCCTCTGGATA 5857 Query 2547 ACCTCGTAGGTATGCAGTATCGCATTGATCACCTTGAGAACCTTAAGGCCGATGTGTTTG 2606 || | || || ||||| ||||| ||||| ||||| || ||||| || || |||| | | Sbjct 5856 ACTTGGTGGGAATGCAATATCGTATTGACCACCTAGAAAACCTCAAAGCGGATGCTATGG 5797 Query 2607 A-TCAGAT-TGCCTACCCTGTCCTTAAGATCAGGGGTGACGTAGAGGACTTCGACTTCGA 2664 | | || | ||| | | || ||| |||||| || || ||||| || || | ||| Sbjct 5796 ACTTAGCTGTGCATCCAATGCTTGTAAT-TCAGGGA-GATGTCGAGGATTTTGATTACGA 5739 Query 2665 GCCTAATGCTCGTATCTACTTGGGCGATGAGGG------TGATGTAGGTTACCTTGT--- 2715 ||| | || |||||| | | |||| ||| || |||| | |||| Sbjct 5738 GCCAGGAGGCCGCATCTACATTGATGATGTGGGGCAATCTGCTGTAACAGAGCTTGGTAA 5679 Query 2716 --ACCTGACAGTACAGCACTTAATGCAGACTTCCAGAT---TCAG----AACATCGAAGC 2766 |||| || | | | | ||| || | | || |||| |||| || | Sbjct 5678 GAACCT--CAATGGCGTAGTGTCTGCTAACAACGAAATCGCTCAGCTAGAACAGCGTA-- 5623 Query 2767 TAAGATGGAGATGATGGCAGGTGCTCCTCGTGAGGCTATGGGTATCCGTAGTGCAGGTGA 2826 |||| ||| ||||||||||||||||| |||||||| || ||| | | || || Sbjct 5622 -----TGGAAATGTACGCAGGTGCTCCTCGTGAAGCTATGGGGATTCGTTCTCCTGGAGA 5568 Query 2827 GAAGACAGCCTTTGAAGTAGGTCAGCTTATGACAGCTGCTGGTCGTATCTTCCAACACAA 2886 ||| || || |||||||| |||||| || |||| ||||||||| |||||| | || Sbjct 5567 GAAAACTGCTTTTGAAGTTCAACAGCTTCAGAATGCTGGTGGTCGTATTTTCCAAGAGAA 5508 Query 2887 GACTGCTCACTTTGAACGTGTGTTTCTTGAGCCTATCCTGAACGCCATGCTTGAGACTGC 2946 || | | |||||||| || | | || ||| | || || || |||||||| || | Sbjct 5507 GATTACCAACTTTGAAATTGAAATGGTAGAACCTGTTCTTAATGCAATGCTTGAAACCTC 5448 Query 2947 TCGTCGTAACATGGA 2961 |||||| || ||||| Sbjct 5447 TCGTCGCAATATGGA 5433 >seq72771 Length=649 Score = 123 bits (136), Expect = 6e-24 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 2771 ATGGAGATGATGGCAGGTGCTCCTCGTGAGGCTATGGGTATCCGTAGTGCAGGTGAGAAG 2830 ||||||||| ||||||||||||||||| || |||||||| ||| | | ||||||||| Sbjct 99 ATGGAGATGTATGCAGGTGCTCCTCGTGAAGCGATGGGTATTCGTTCTCCTGGTGAGAAG 158 Query 2831 ACAGCCTTTGAAGTAGGTCAGCTTATGACAGCTGCTGGTCGTATCTTCCAACACAAGACT 2890 ||||| || ||||| ||||| || || | ||||||||| |||||| | || | Sbjct 159 ACAGCATTCGAAGTTCAACAGCTACAGAACGCAGGTGGTCGTATTTTCCAAGAGAAAATA 218 Query 2891 GCTCACTTTGAACGTGTGTTTCTTGAGCCTATCCTGAACGCCATGCTTGAGACTGCTCGT 2950 | |||||||| || | |||| ||| | || || || ||||| || |||||||| Sbjct 219 ACAAACTTTGAAATTGAAATGGTTGAACCTGTTCTTAATGCAATGCTGGAAACTGCTCGA 278 Query 2951 CGTAACATGGA 2961 ||||| ||||| Sbjct 279 CGTAATATGGA 289 >seq28764 Length=21750 Score = 96.9 bits (106), Expect = 9e-16 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 1683 AAGGTTAAAGAGTGGAAAGAGCTTCGTAACTATATCTATGCTACGGACACTCGTACTACC 1742 ||| || | ||||||||||| |||||||| ||||| | ||||||||||||| ||||| Sbjct 315 AAGATTGATGAGTGGAAAGAACTTCGTAATTATATTTTTGCTACGGACACTTCCACTACA 256 Query 1743 TCTAA-CAACAAGTTGCCTTGGTCTAACTCTACAACTACCCCCAAGCTAACTCAGATTGC 1801 ||| ||| | || |||||| ||||| ||||| | ||| ||||| ||||||| Sbjct 255 AGTAACCAATCACTT-CCTTGGAAGAACTCCACAACAATCCCTAAGCTTTGTCAGATTCG 197 Query 1802 TGACAACCTTCACGCAAACTACTTTGCTGCTTTGTTCCCT 1841 || ||| | || | |||||| | |||| ||||||||| Sbjct 196 GGATAACTTACATTCTAACTACATCTCTGCATTGTTCCCT 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127354637196000